Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 4.8e-66 255.0 198 100.0
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 1.7e-42 176.8 190 72.6
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 2.9e-31 139.4 190 68.9
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.9e-30 136.7 190 68.4
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 3.3e-27 125.9 190 42.1
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 9.7e-27 124.4 188 42.0
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.3e-26 124.0 190 64.7
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 7.7e-24 114.8 192 38.0
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 1.7e-23 113.6 206 60.7
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 2.9e-23 112.8 190 37.9
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 1.1e-22 110.9 190 38.9
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.9e-22 110.2 191 36.6
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 2.1e-21 106.7 193 44.6
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.4e-20 104.0 191 52.4
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 1.4e-20 104.0 190 38.4
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 3.4e-19 99.4 192 37.5
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 5.7e-19 98.6 188 47.9
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 2.8e-18 96.3 191 36.1
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 6.3e-18 95.1 191 34.6
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 8.3e-18 94.7 183 36.1
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 5.4e-17 92.0 204 34.8
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 7.0e-17 91.7 192 52.1
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 7.0e-17 91.7 192 52.1
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.2e-16 90.9 194 44.8
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 1.6e-16 90.5 191 47.1
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 2.7e-16 89.7 188 48.9
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 4.5e-16 89.0 190 33.2
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 5.9e-16 88.6 190 51.6
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 5.9e-16 88.6 188 45.7
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 7.7e-16 88.2 194 34.0
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 1.3e-15 87.4 188 54.3
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 1.3e-15 87.4 190 58.9
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 1.3e-15 87.4 191 35.1
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.7e-15 87.0 190 40.0
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 1.7e-15 87.0 192 32.8
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 2.9e-15 86.3 191 55.0
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 2.9e-15 86.3 190 52.1
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 3.8e-15 85.9 193 44.0
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 6.5e-15 85.1 192 46.9
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 6.5e-15 85.1 189 48.7
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 6.5e-15 85.1 190 45.3
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 2.5e-14 83.2 193 40.9
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 2.5e-14 83.2 187 41.7
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 2.5e-14 83.2 196 47.4
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 2.5e-14 83.2 187 33.2
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 5.5e-14 82.0 190 51.1
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 9.4e-14 81.3 147 51.0
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 9.4e-14 81.3 190 52.6
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 2.1e-13 80.1 147 36.7
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 6.1e-13 78.6 68 58.8
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 6.1e-13 78.6 68 58.8
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 1.4e-12 77.4 68 61.8
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 1.4e-12 77.4 188 56.4
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 3.0e-12 76.3 199 31.7
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 3.0e-12 76.3 204 45.1
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 1.5e-11 73.9 140 38.6
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 1.5e-11 73.9 190 34.2
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 2.6e-11 73.2 123 36.6
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 3.4e-11 72.8 197 47.2
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 4.4e-11 72.4 79 50.6
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 4.4e-11 72.4 188 30.9
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 4.4e-11 72.4 197 44.2
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 5.7e-11 72.0 67 55.2
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 5.7e-11 72.0 190 33.2
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 7.5e-11 71.6 191 53.9
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 9.8e-11 71.2 191 54.5
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 4.9e-10 68.9 68 55.9
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 1.8e-09 67.0 68 48.5
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 2.4e-09 66.6 166 53.6
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 2.4e-09 66.6 187 27.3
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 4.1e-09 65.9 68 51.5
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 9.2e-09 64.7 186 40.9
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 4.5e-08 62.4 188 53.2
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 7.7e-08 61.6 79 46.8
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 2.9e-07 59.7 188 42.0
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 8.6e-07 58.2 64 59.4
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 8.6e-07 58.2 188 26.6
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 8.6e-07 58.2 128 32.8
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 1.1e-06 57.8 190 40.5
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 2.5e-06 56.6 40 67.5
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 3.3e-06 56.2 40 70.0
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 7.3e-06 55.1 190 41.1
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 7.3e-06 55.1 190 49.5
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 9.5e-06 54.7 193 43.5


User provided reference genes

Program Settings