Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1460.3 744 100.0
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1377.8 745 93.6
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1375.1 744 93.5
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1374.0 744 91.9
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1371.3 744 92.6
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1370.9 744 92.5
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1356.3 744 92.5
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1351.3 745 90.5
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 746 85.4
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1283.5 744 86.0
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1278.8 747 84.9
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 746 84.7
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 744 84.7
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 744 83.7
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1267.7 747 85.1
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1267.7 752 84.7
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 748 85.7
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1264.2 749 86.2
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 749 85.3
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1261.1 751 83.8
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1260.0 744 83.2
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1257.7 750 83.2
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 751 83.2
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 748 84.0
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 746 85.3
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 750 83.2
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 750 82.8
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 747 83.0
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1250.7 750 84.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 742 84.0
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 749 82.8
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 746 82.8
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 749 83.0
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 750 84.1
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 744 82.1
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1239.6 742 82.7
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 749 82.0
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1237.2 743 82.9
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1237.2 748 82.0
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1236.9 802 79.3
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 746 80.8
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 743 82.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1234.9 749 81.7
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1233.8 744 81.6
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1231.1 749 82.2
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 745 82.0
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1230.3 747 81.5
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1230.3 748 81.8
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1229.5 746 81.6
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1229.5 743 82.2
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 748 82.0
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1228.0 748 81.3
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 743 81.7
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 747 80.3
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 748 80.7
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 743 82.0
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 747 80.2
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 748 81.0
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 744 82.1
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 747 80.2
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 747 80.2
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 747 80.2
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 748 80.9
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1224.5 658 91.9
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 749 81.7
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 658 91.9
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 747 79.9
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 747 79.9
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 691 86.1
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 747 79.8
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 781 79.6
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 748 81.4
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 747 80.2
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 747 79.8
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1217.2 744 82.5
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 750 80.0
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 749 80.8
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1215.3 744 82.4
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 749 79.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 759 80.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 744 80.9
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 747 79.8
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 759 80.8
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 751 81.6
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 748 81.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 749 80.9
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1207.6 691 85.2
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 753 78.9
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 747 80.5
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1201.8 780 76.4
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1201.0 749 80.9
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 738 81.3
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 744 81.2
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 750 80.5
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 750 81.2
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 843 72.8
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 748 79.5
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1186.0 751 78.4
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1184.9 692 83.4
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1182.2 740 79.9
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 753 78.2
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1180.6 692 83.4
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1173.3 692 82.8
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 733 78.3
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1153.7 658 86.3
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1151.7 751 77.5
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1145.2 748 77.0
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1139.0 744 77.0
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1136.7 749 77.6
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1132.1 775 73.4
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1119.0 663 84.0
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1118.6 658 85.4
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1115.5 749 75.4
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1114.0 748 77.3
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1112.4 740 75.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1095.5 1056 58.1
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.0e-311 1072.8 623 86.0
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 7.0e-304 1047.0 748 73.3
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.9e-288 995.7 677 69.7
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.0e-286 989.9 687 71.5
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 4.3e-285 984.6 678 69.5
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 1.2e-284 983.0 686 69.7
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-284 983.0 675 72.0
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-284 983.0 675 72.0
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.1e-283 979.9 675 71.7
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 4.2e-256 888.3 596 75.8
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-252 875.9 596 75.3
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 2.4e-251 872.5 679 62.4
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.1e-227 792.3 679 57.0
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.1e-223 779.6 685 57.7
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.0e-213 746.5 675 56.9
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.1e-207 724.9 676 60.5
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.6e-197 693.0 676 52.1
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.2e-173 614.4 732 46.0
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.3e-161 574.3 297 100.0
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.7e-161 573.9 361 78.1
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.8e-159 565.8 305 90.2
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 7.9e-154 548.5 323 86.4
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.6e-130 471.1 301 79.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 2.8e-127 460.3 309 73.8
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.1e-123 448.4 294 72.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.8e-119 433.7 219 99.5
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 3.8e-108 396.7 236 80.9
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.6e-98 364.8 241 77.2
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.7e-93 345.9 298 62.8
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 4.2e-91 340.1 300 61.0
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 4.1e-86 323.6 225 74.2
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 8.9e-73 279.3 172 77.3
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.4e-65 255.4 126 95.2
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 3.1e-65 254.2 371 39.9
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.2e-63 248.1 151 80.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.9e-62 245.0 394 43.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 4.6e-61 240.4 260 53.8
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.6e-58 231.9 114 94.7
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.2e-45 189.1 139 70.5
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.6e-45 188.7 117 78.6
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.0e-41 174.1 149 62.4
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 2.9e-39 167.9 101 73.3
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 4.6e-37 160.6 142 57.0
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.7e-36 158.7 122 68.0
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.3e-36 158.3 86 83.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 9.3e-30 136.3 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.0e-28 132.9 105 61.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.6e-26 125.6 140 52.9
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 3.7e-26 124.4 117 61.5
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.1e-26 123.2 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 9.0e-25 119.8 99 65.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.8e-23 114.4 220 30.9
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.9e-19 102.1 138 47.1
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 5.9e-16 90.5 56 78.6
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.7e-15 89.0 50 80.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 6.7e-12 77.0 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.1e-11 76.3 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 1.6e-10 72.4 38 92.1


User provided reference genes

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