Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.3e-94 347.8 159 100.0
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.1e-76 290.0 143 90.2
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 6.8e-71 270.8 135 88.9
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.2e-67 260.0 134 81.3
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 8.5e-66 253.8 139 77.0
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 5.5e-65 251.1 136 77.2
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 5.5e-65 251.1 137 76.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 2.7e-64 248.8 133 78.2
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 3.6e-64 248.4 135 78.5
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 6.1e-64 247.7 128 81.2
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 6.1e-64 247.7 129 80.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 8.0e-64 247.3 134 77.6
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.4e-63 246.5 134 76.1
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.8e-63 246.1 137 77.4
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 2.3e-63 245.7 134 77.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.3e-63 245.7 134 77.6
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 2.3e-63 245.7 134 77.6
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.0e-63 245.0 137 76.6
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 5.2e-63 244.6 136 75.7
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 5.2e-63 244.6 134 78.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 6.8e-63 244.2 137 75.9
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 6.8e-63 244.2 134 76.1
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 8.8e-63 243.8 137 77.4
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.2e-62 243.4 135 77.0
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.2e-62 243.4 134 78.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.2e-62 243.4 138 74.6
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.5e-62 243.0 137 75.9
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.5e-62 243.0 135 75.6
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.0e-62 242.7 137 75.2
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.6e-62 242.3 138 77.5
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.6e-62 242.3 138 76.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.4e-62 241.9 134 77.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.4e-62 241.9 134 76.9
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 4.4e-62 241.5 141 73.8
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 4.4e-62 241.5 136 73.5
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.5e-62 240.7 138 76.1
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 2.8e-61 238.8 136 74.3
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 3.7e-61 238.4 134 73.1
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 3.7e-61 238.4 130 73.8
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 6.3e-61 237.7 134 76.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.3e-61 237.7 134 74.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 6.3e-61 237.7 134 72.4
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 8.3e-61 237.3 134 76.9
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 8.3e-61 237.3 135 73.3
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 8.3e-61 237.3 136 73.5
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.1e-60 236.9 137 71.5
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-60 236.9 143 74.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.1e-60 236.9 137 73.0
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.4e-60 236.5 151 69.5
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.4e-60 236.5 134 76.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.4e-60 236.5 134 74.6
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.8e-60 236.1 138 73.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-60 235.7 121 83.5
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.4e-60 235.7 137 71.5
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 4.1e-60 235.0 136 74.3
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 5.4e-60 234.6 137 70.8
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 5.4e-60 234.6 134 73.9
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.0e-60 234.2 137 70.8
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 7.0e-60 234.2 134 72.4
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 9.1e-60 233.8 137 71.5
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.2e-59 233.4 134 75.4
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.6e-59 233.0 134 73.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.6e-59 233.0 137 70.8
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 2.7e-59 232.3 136 71.3
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 2.7e-59 232.3 132 72.7
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 3.5e-59 231.9 134 69.4
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.5e-59 231.9 134 69.4
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 3.5e-59 231.9 133 72.2
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 4.5e-59 231.5 136 72.1
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.0e-58 230.3 107 100.0
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.7e-58 229.6 134 73.1
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.7e-58 229.6 131 74.0
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.3e-58 229.2 136 70.6
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.3e-58 229.2 135 73.3
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.8e-58 228.4 137 69.3
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 5.0e-58 228.0 134 71.6
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 5.0e-58 228.0 138 69.6
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.5e-57 226.5 137 70.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.5e-57 225.7 131 71.8
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 3.3e-57 225.3 123 75.6
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 3.3e-57 225.3 137 70.8
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.3e-57 225.3 137 67.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 4.2e-57 224.9 135 70.4
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 4.2e-57 224.9 136 72.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 5.5e-57 224.6 134 70.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 7.2e-57 224.2 134 70.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 7.2e-57 224.2 135 68.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.2e-57 224.2 121 81.0
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 7.2e-57 224.2 126 74.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 9.5e-57 223.8 135 70.4
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 9.5e-57 223.8 136 72.1
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.5e-57 223.8 137 67.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 9.5e-57 223.8 131 72.5
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.6e-56 223.0 137 69.3
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.8e-56 222.2 135 71.1
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.8e-56 222.2 135 71.1
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.8e-56 222.2 136 71.3
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 3.6e-56 221.9 120 79.2
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 8.0e-56 220.7 135 67.4
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 8.0e-56 220.7 135 69.6
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.8e-55 219.5 133 69.9
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.8e-55 219.5 135 68.1
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.3e-55 219.2 135 68.9
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.3e-55 219.2 137 67.9
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.3e-55 219.2 137 67.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 3.0e-55 218.8 135 68.9
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.2e-54 216.9 134 68.7
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.2e-54 216.9 128 72.7
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.0e-54 216.1 131 70.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 3.4e-54 215.3 135 68.1
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 3.4e-54 215.3 136 67.6
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 5.7e-54 214.5 121 74.4
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 2.2e-53 212.6 130 69.2
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 8.3e-53 210.7 133 66.9
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.1e-52 210.3 125 69.6
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.4e-52 209.9 173 57.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 5.4e-52 208.0 129 69.8
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.2e-51 206.8 133 67.7
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.7e-51 205.7 126 70.6
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 4.6e-51 204.9 125 65.6
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.0e-50 203.8 132 66.7
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.6e-50 201.1 137 65.7
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 8.6e-50 200.7 134 64.2
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-49 200.3 121 66.1
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 9.5e-49 197.2 129 66.7
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 2.1e-48 196.1 121 67.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.6e-48 195.3 137 67.2
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.0e-47 191.8 133 60.9
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 5.2e-47 191.4 113 68.1
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.6e-46 189.1 132 61.4
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 4.1e-44 181.8 101 75.2
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.4e-44 181.4 133 59.4
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 7.0e-44 181.0 107 68.2
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.5e-43 178.7 129 58.1
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.9e-42 175.3 133 57.1
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 2.8e-40 169.1 137 59.9
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.2e-38 163.7 125 60.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.6e-38 162.5 125 59.2
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.9e-37 159.1 96 72.9
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.9e-37 158.3 85 80.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.4e-36 156.8 130 57.7
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-34 150.2 100 64.0
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.8e-31 139.8 141 44.7
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.0e-31 138.7 75 80.0
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 7.8e-27 124.4 74 74.3
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.1e-26 121.7 72 70.8
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-25 120.6 112 53.6
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-23 113.6 63 77.8
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-22 110.5 78 61.5
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 5.4e-20 101.7 80 60.0


User provided reference genes

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