Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 7.9e-202 706.8 340 100.0
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 6.8e-161 570.9 334 81.4
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 1.8e-153 546.2 336 77.4
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 1.2e-136 490.3 339 71.7
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.5e-136 490.0 339 71.7
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 5.8e-136 488.0 339 70.8
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 2.9e-119 432.6 349 61.3
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 1.9e-118 429.9 346 61.8
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 1.9e-118 429.9 353 60.9
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 5.4e-118 428.3 349 61.3
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 1.6e-117 426.8 352 60.2
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 2.1e-117 426.4 352 61.4
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 2.7e-117 426.0 353 58.4
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 2.7e-117 426.0 353 58.4
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 3.5e-117 425.6 352 59.9
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 1.2e-114 417.2 343 59.2
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 3.1e-113 412.5 341 58.9
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 6.8e-113 411.4 351 59.3
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 8.9e-113 411.0 340 60.6
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 7.6e-112 407.9 351 58.1
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 1.3e-111 407.1 349 58.2
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 2.9e-111 406.0 347 58.2
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 1.1e-110 404.1 356 56.2
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 1.9e-110 403.3 341 58.4
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 4.2e-110 402.1 350 57.4
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 4.2e-110 402.1 339 58.4
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 9.3e-110 401.0 352 58.2
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 2.7e-109 399.4 353 56.1
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 4.6e-109 398.7 337 58.5
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 1.7e-108 396.7 348 57.5
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 3.0e-108 396.0 349 57.0
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 6.6e-108 394.8 359 55.7
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 8.7e-108 394.4 352 54.8
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 8.7e-108 394.4 350 57.4
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 3.3e-107 392.5 352 54.0
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 4.3e-107 392.1 359 55.4
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 5.6e-107 391.7 354 55.9
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 5.6e-107 391.7 351 55.3
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 7.3e-107 391.3 336 57.1
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 7.3e-107 391.3 341 57.5
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 7.3e-107 391.3 352 54.3
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 2.1e-106 389.8 334 56.6
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 1.8e-105 386.7 349 55.9
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.4e-105 386.3 353 55.0
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 1.5e-104 383.6 333 57.4
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 2.0e-104 383.3 350 54.6
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 7.6e-104 381.3 348 53.7
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 7.6e-104 381.3 353 54.4
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 3.8e-103 379.0 322 60.6
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 8.4e-103 377.9 353 53.3
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 1.9e-102 376.7 338 53.6
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 1.2e-101 374.0 352 53.7
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 7.9e-101 371.3 343 52.8
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 1.3e-100 370.5 345 54.2
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 1.3e-100 370.5 353 51.6
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 1.5e-99 367.1 336 53.3
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 3.3e-99 365.9 342 52.9
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 4.3e-99 365.5 334 53.3
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 7.3e-99 364.8 336 53.3
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 1.3e-98 364.0 337 53.1
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.6e-98 363.6 338 53.8
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 2.8e-98 362.8 336 52.4
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 6.2e-98 361.7 337 52.2
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 6.2e-98 361.7 343 50.7
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 8.1e-98 361.3 341 53.1
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 8.1e-98 361.3 359 50.7
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 1.8e-97 360.1 354 52.3
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 1.8e-97 360.1 330 53.9
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 4.0e-97 359.0 336 52.1
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 5.3e-97 358.6 347 53.0
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 9.0e-97 357.8 327 54.7
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 1.2e-96 357.5 344 49.7
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 1.5e-96 357.1 303 57.4
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 3.4e-96 355.9 347 53.0
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.2e-95 353.2 315 56.5
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 3.8e-95 352.4 341 52.5
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 3.8e-95 352.4 335 52.5
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 8.4e-95 351.3 361 51.8
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 3.2e-94 349.4 328 54.9
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 4.2e-94 349.0 348 51.1
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 5.4e-94 348.6 335 52.8
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 7.1e-94 348.2 260 64.2
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 2.7e-93 346.3 364 49.7
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 2.7e-93 346.3 337 49.3
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 3.5e-93 345.9 338 50.6
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 4.6e-93 345.5 337 49.0
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 7.9e-93 344.7 448 42.9
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 7.9e-93 344.7 337 49.0
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 3.9e-92 342.4 327 53.2
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 6.7e-92 341.7 362 48.6
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 1.1e-91 340.9 331 53.5
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 3.3e-91 339.3 337 49.3
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 9.6e-91 337.8 351 47.6
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 3.1e-89 332.8 353 47.9
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 9.0e-89 331.3 316 52.2
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 4.5e-88 328.9 341 49.0
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 4.5e-88 328.9 347 47.0
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 1.0e-87 327.8 309 54.4
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.6e-85 320.5 334 47.9
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 3.1e-81 306.2 316 50.0
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 1.8e-76 290.4 329 47.4
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 1.8e-73 280.4 546 33.7
Glyma.02G240302 Glycine max HOM05D005252 ORTHO05D006788 1.2e-69 267.7 227 56.8
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 4.6e-69 265.8 410 36.1
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 5.5e-62 242.3 328 40.9
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 1.5e-59 234.2 201 58.7
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 3.3e-59 233.0 361 38.5
CDE04G0719 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 5.9e-56 222.2 223 52.0
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 1.7e-55 220.7 334 36.8
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 7.2e-54 215.3 257 45.1
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 1.5e-46 191.0 153 58.2
ATR0807G103 Amborella trichopoda HOM05D005252 ORTHO05D006788 2.4e-41 173.7 222 43.2
Mapoly0060s0114 Marchantia polymorpha HOM05D005252 ORTHO05D006788 5.9e-40 169.1 255 39.2
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 6.5e-39 165.6 143 55.9
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 1.2e-37 161.4 222 42.3
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.7e-37 160.2 136 58.8
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 4.1e-33 146.4 140 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 7.7e-32 142.1 157 47.1
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.0e-23 115.2 77 71.4
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 2.5e-22 110.5 370 27.8
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 1.0e-20 105.1 174 37.9
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 9.2e-17 92.0 66 57.6
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 1.5e-14 84.7 167 28.7
BcaC03g18542 Brassica carinata HOM05D005252 ORTHO05D032136 2.1e-13 80.9 58 63.8
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.8e-13 80.5 48 77.1
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 6.2e-13 79.3 47 78.7
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 6.2e-13 79.3 47 78.7
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 6.2e-13 79.3 47 78.7
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.4e-12 78.2 56 64.3
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.1e-12 77.0 48 72.9
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 5.2e-12 76.3 53 71.7
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 5.8e-11 72.8 47 72.3
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 7.5e-11 72.4 47 68.1
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.4e-09 67.4 44 72.7
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 7.8e-08 62.4 50 52.0
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 1.5e-06 58.2 173 28.3
Zm00001eb070340 Zea mays HOM05D005252 ORTHO05D006788 3.3e-06 57.0 49 61.2
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 5.6e-06 56.2 62 43.5
C02p08900 Brassica napus HOM05D005252 ORTHO05D032136 9.5e-06 55.5 41 63.4
BolC2t06799H Brassica oleracea HOM05D005252 ORTHO05D032136 9.5e-06 55.5 41 63.4


User provided reference genes

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