Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.0e-221 773.1 383 100.0
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.2e-108 397.5 349 62.2
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.3e-104 384.0 382 55.5
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.7e-104 383.6 382 55.5
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.5e-103 380.6 382 55.0
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.7e-73 280.0 387 44.2
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 4.6e-73 279.3 387 43.4
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 3.4e-68 263.1 387 42.6
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 4.4e-68 262.7 197 65.5
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.3e-67 261.2 191 68.1
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.4e-66 256.9 289 51.6
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.6e-65 254.2 188 67.0
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 7.8e-65 251.9 204 63.2
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.7e-64 250.8 344 45.1
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.7e-64 250.8 387 40.8
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 3.0e-64 250.0 246 55.3
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 3.0e-64 250.0 329 44.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 5.1e-64 249.2 239 57.7
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 6.6e-64 248.8 293 51.2
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 6.6e-64 248.8 293 51.2
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.1e-63 248.1 191 64.9
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 2.5e-63 246.9 156 73.7
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 4.3e-63 246.1 191 64.9
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 4.3e-63 246.1 215 60.5
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.3e-63 245.4 366 44.3
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.6e-62 244.2 368 41.6
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 2.1e-62 243.8 240 54.2
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.1e-62 243.8 188 64.4
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.6e-62 243.0 246 54.1
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 4.7e-62 242.7 453 38.6
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.1e-61 241.5 191 63.4
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.1e-61 241.5 154 72.7
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.4e-61 241.1 197 60.4
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 5.2e-61 239.2 164 71.3
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.2e-60 238.0 451 38.1
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.5e-60 237.7 316 44.9
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.5e-60 237.7 237 54.0
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 3.4e-60 236.5 357 41.2
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.4e-60 236.5 164 70.7
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 3.4e-60 236.5 172 62.8
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.3e-59 234.6 417 38.6
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.7e-59 234.2 152 71.7
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.7e-59 234.2 385 41.0
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.9e-59 233.4 151 71.5
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.9e-59 233.4 151 71.5
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.9e-59 233.4 202 57.9
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.9e-59 233.4 165 67.3
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 6.4e-59 232.3 204 58.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 8.4e-59 231.9 374 41.2
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.4e-58 231.1 176 63.6
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.4e-58 231.1 176 63.6
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 5.4e-58 229.2 186 59.7
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 5.4e-58 229.2 186 59.7
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 7.1e-58 228.8 157 66.2
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 6.0e-57 225.7 374 41.2
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 7.8e-57 225.3 336 42.9
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.0e-56 224.9 259 49.4
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.0e-56 224.9 183 59.0
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 3.0e-56 223.4 152 69.1
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 1.1e-55 221.5 177 63.8
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 4.3e-55 219.5 180 58.3
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.6e-54 217.6 153 66.0
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.1e-54 217.2 152 65.8
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 3.6e-54 216.5 243 51.9
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 1.1e-53 214.9 166 62.7
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.3e-53 212.6 232 50.4
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.3e-53 212.6 232 50.4
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.0e-52 210.7 154 64.3
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.0e-52 210.7 154 64.3
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 2.6e-52 210.3 142 65.5
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 3.4e-52 209.9 160 63.8
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 3.4e-52 209.9 160 63.8
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 3.4e-52 209.9 160 63.8
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 3.4e-52 209.9 160 63.8
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 4.5e-52 209.5 154 64.3
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.8e-52 209.1 154 64.3
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 7.6e-52 208.8 166 61.4
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.7e-51 207.6 201 51.7
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.2e-51 207.2 381 38.1
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.9e-51 206.8 169 57.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 3.8e-51 206.5 281 45.2
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 4.9e-51 206.1 165 60.0
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 4.9e-51 206.1 165 60.0
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.1e-50 204.9 174 58.0
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.1e-50 204.9 326 42.0
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 3.2e-50 203.4 158 62.0
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.4e-50 202.6 254 46.1
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 5.4e-50 202.6 166 57.2
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 5.4e-50 202.6 145 67.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 7.1e-50 202.2 158 60.1
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.2e-49 201.4 158 62.0
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-49 201.4 146 65.8
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 2.7e-49 200.3 294 39.8
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 4.6e-49 199.5 295 39.3
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.7e-48 197.6 244 49.2
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 3.3e-47 193.4 176 58.5
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 3.3e-47 193.4 187 55.1
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.8e-46 190.3 261 47.5
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 4.8e-46 189.5 281 41.6
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.1e-45 188.3 166 54.2
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.4e-45 188.0 332 40.1
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 2.4e-45 187.2 237 46.8
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.6e-44 183.7 154 58.4
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 4.5e-44 183.0 159 56.0
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.7e-43 181.0 145 59.3
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.9e-42 177.6 197 46.2
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 4.2e-42 176.4 163 56.4
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 6.7e-40 169.1 218 47.7
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.6e-38 164.5 137 56.9
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 2.8e-38 163.7 98 76.5
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.1e-37 161.8 255 41.2
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 6.9e-37 159.1 98 75.5
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 9.0e-37 158.7 192 43.2
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 9.0e-37 158.7 121 62.0
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.5e-36 157.9 77 92.2
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 2.9e-35 153.7 190 46.8
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 2.9e-35 153.7 190 46.8
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 4.9e-35 152.9 137 51.1
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 4.9e-35 152.9 77 89.6
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 8.4e-35 152.1 160 46.2
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.4e-34 151.4 133 53.4
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 4.2e-34 149.8 103 68.0
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.2e-33 148.3 143 55.2
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.8e-32 144.4 134 47.8
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 9.6e-31 138.7 123 52.8
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 6.3e-30 136.0 104 59.6
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 4.1e-29 133.3 99 62.6
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.5e-28 131.3 97 62.9
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.3e-27 128.3 134 47.8
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 4.6e-25 119.8 104 59.6
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.6e-22 111.3 102 52.0
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.7e-22 110.2 94 55.3
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 6.3e-22 109.4 133 40.6
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 7.7e-20 102.4 86 61.6
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.0e-19 102.1 79 62.0
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 2.2e-19 100.9 302 28.8
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 5.0e-19 99.8 88 59.1
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 6.5e-19 99.4 118 43.2
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.9e-18 97.8 56 71.4
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.4e-16 91.7 65 66.2
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 3.3e-15 87.0 76 53.9
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 5.7e-15 86.3 319 28.8
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 7.4e-15 85.9 76 56.6
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.7e-14 84.7 64 65.6
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 4.1e-13 80.1 58 62.1
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 6.9e-13 79.3 124 40.3
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 2.9e-11 73.9 64 53.1
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 4.7e-09 66.6 89 47.2
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 4.8e-06 56.6 47 53.2


User provided reference genes

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