Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.5e-105 386.3 210 100.0
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 6.6e-66 254.6 218 71.6
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.9e-61 239.2 213 67.6
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.9e-61 238.4 213 67.6
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.9e-61 238.4 217 66.8
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.7e-58 229.9 205 70.7
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 3.3e-49 199.1 225 57.3
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.4e-46 189.1 206 55.8
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 5.8e-46 188.3 224 54.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.2e-45 186.4 210 57.1
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.1e-44 184.1 214 56.1
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 7.1e-44 181.4 214 55.6
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.1e-43 179.9 211 54.5
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.3e-42 177.2 215 51.6
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.3e-42 176.4 212 52.8
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 3.0e-42 176.0 207 51.7
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.7e-42 174.9 217 53.5
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 6.7e-42 174.9 212 54.7
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.5e-41 173.7 216 51.4
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.9e-41 173.3 211 53.6
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.9e-41 173.3 203 53.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.3e-41 172.6 213 54.5
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 7.4e-41 171.4 212 53.8
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.8e-40 169.5 209 51.2
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.7e-40 169.1 214 51.4
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.7e-40 169.1 216 48.6
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 6.2e-40 168.3 212 53.8
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 8.1e-40 167.9 214 53.3
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.8e-39 166.8 210 51.4
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.4e-39 166.4 216 51.4
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.1e-39 166.0 225 47.1
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.6e-38 162.9 210 51.0
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.5e-38 162.2 212 50.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 7.6e-38 161.4 215 50.2
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.0e-37 161.0 210 50.0
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.3e-37 160.6 213 50.2
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.3e-37 160.6 208 50.0
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.9e-37 159.5 210 49.5
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 2.9e-37 159.5 209 50.2
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 3.8e-37 159.1 207 49.8
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.8e-37 159.1 212 51.4
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.4e-36 157.1 220 49.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.2e-36 156.0 210 49.0
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 5.5e-36 155.2 225 52.0
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 5.5e-36 155.2 209 52.2
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 7.1e-36 154.8 217 48.4
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.2e-35 154.1 211 48.8
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.1e-35 153.3 250 44.8
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 6.0e-35 151.8 208 47.6
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 7.9e-35 151.4 203 46.8
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.9e-35 151.4 212 47.2
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 7.9e-35 151.4 215 49.3
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.8e-34 150.2 204 48.0
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.8e-34 150.2 210 48.6
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.3e-34 149.8 213 47.9
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 6.7e-34 148.3 204 47.5
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 6.7e-34 148.3 209 45.9
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 8.7e-34 147.9 210 47.6
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.3e-33 146.0 215 48.4
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 5.7e-33 145.2 206 47.1
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 5.7e-33 145.2 208 46.6
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 7.4e-33 144.8 209 46.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.3e-32 144.1 222 50.9
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.8e-32 142.9 214 46.7
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 4.8e-32 142.1 204 44.6
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.2e-32 141.7 210 46.7
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.1e-31 141.0 208 45.2
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.1e-31 141.0 208 45.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.4e-31 139.8 212 43.9
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.1e-31 139.4 211 44.1
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 4.1e-31 139.0 211 46.0
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 5.3e-31 138.7 208 45.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 6.9e-31 138.3 208 45.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-30 137.5 208 44.7
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-30 137.5 204 46.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.2e-30 137.5 208 43.8
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.5e-30 137.1 199 48.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.5e-30 137.1 208 44.7
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.0e-30 136.7 214 44.4
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.4e-30 136.0 212 45.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.5e-30 135.6 214 43.9
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 4.5e-30 135.6 251 40.2
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.8e-30 135.2 208 46.6
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 7.6e-30 134.8 204 45.1
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 7.6e-30 134.8 208 44.2
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.0e-29 134.4 216 42.6
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.3e-29 134.0 213 43.2
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.3e-29 134.0 215 43.3
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.7e-29 133.7 217 44.2
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 5.0e-29 132.1 200 47.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 6.5e-29 131.7 208 43.8
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 6.5e-29 131.7 208 43.8
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 6.5e-29 131.7 208 43.8
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 8.4e-29 131.3 207 45.4
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.1e-28 131.0 212 44.8
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.1e-28 131.0 213 43.2
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.4e-28 130.6 215 45.1
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.9e-28 130.2 208 44.2
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.9e-28 130.2 212 47.2
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.9e-28 130.2 213 42.3
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.5e-28 129.8 216 44.0
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.5e-28 129.8 213 43.7
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.5e-28 129.8 213 43.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 4.2e-28 129.0 231 43.3
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 5.5e-28 128.6 212 47.2
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.1e-28 128.3 213 43.2
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.3e-28 127.9 216 44.0
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 9.3e-28 127.9 216 44.0
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-27 127.5 203 44.8
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.7e-27 126.3 200 45.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 3.5e-27 125.9 196 47.4
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 4.6e-27 125.6 200 46.0
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 4.6e-27 125.6 200 46.0
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 4.6e-27 125.6 200 46.0
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.6e-27 125.6 214 43.9
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.0e-26 124.4 212 44.8
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.3e-26 124.0 196 46.4
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.8e-26 123.6 214 39.3
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.3e-26 123.2 204 43.1
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.3e-26 123.2 203 45.8
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.0e-26 122.9 198 45.5
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 8.7e-26 121.3 217 39.6
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.1e-25 120.9 198 44.4
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.1e-25 120.9 207 41.5
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-25 120.2 176 47.7
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-25 120.2 176 47.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.9e-25 120.2 207 43.5
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.3e-25 119.0 199 41.7
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 5.7e-25 118.6 217 40.1
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 7.4e-25 118.2 197 43.1
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.8e-24 116.3 188 44.1
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 2.8e-24 116.3 207 43.5
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 4.8e-24 115.5 184 43.5
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.8e-24 115.5 208 41.8
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.4e-23 114.0 206 43.7
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.4e-23 114.0 226 38.1
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-23 113.6 204 43.6
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 5.3e-23 112.1 193 44.0
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 9.0e-23 111.3 176 43.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 9.0e-23 111.3 176 43.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.5e-22 110.5 176 44.9
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.6e-22 109.8 182 41.8
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 7.7e-22 108.2 193 43.0
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.3e-21 107.5 213 38.0
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 8.5e-21 104.8 197 41.6
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.1e-20 104.4 223 39.5
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.2e-20 102.8 197 40.1
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 7.2e-20 101.7 234 37.6
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.2e-19 100.9 166 45.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.1e-19 100.1 213 37.6
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 4.6e-19 99.0 97 58.8
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.9e-19 98.2 210 33.8
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 3.0e-18 96.3 181 38.7
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.7e-18 95.1 216 34.7
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.1e-17 94.4 194 44.3
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.0e-17 93.6 210 33.8
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 4.3e-17 92.4 212 35.8
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 7.4e-17 91.7 103 51.5
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.7e-16 90.5 71 67.6
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 6.3e-16 88.6 211 39.8
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 9.1e-15 84.7 90 55.6
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 2.2e-13 80.1 103 48.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 6.5e-13 78.6 197 39.1
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.9e-12 77.0 133 40.6
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.1e-11 73.6 188 36.7
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.0e-10 71.2 208 35.1
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 8.8e-10 68.2 208 32.7
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 8.8e-10 68.2 207 30.9
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.5e-09 67.4 205 37.1
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.0e-09 67.0 207 33.3
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 5.7e-09 65.5 204 29.9
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.7e-08 63.9 195 32.8
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 6.3e-08 62.0 188 30.9
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.1e-07 59.3 188 34.0
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 9.1e-07 58.2 207 34.3
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.1e-07 58.2 124 34.7
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 5.9e-06 55.5 174 35.6
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 7.7e-06 55.1 193 28.5


User provided reference genes

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