Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 1.8e-151 539.3 276 100.0
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 1.3e-125 453.4 277 85.6
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.1e-121 440.3 276 83.7
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.1e-121 440.3 276 83.7
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 7.2e-121 437.6 276 83.7
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 5.8e-110 401.4 279 78.5
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 9.8e-110 400.6 282 78.4
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 3.7e-109 398.7 279 77.8
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 4.1e-108 395.2 279 75.6
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 7.8e-107 391.0 287 72.8
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 3.3e-105 385.6 277 76.2
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 5.6e-105 384.8 248 81.5
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 3.6e-104 382.1 274 75.5
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 2.3e-103 379.4 277 74.7
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 1.5e-102 376.7 282 74.5
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 2.6e-102 375.9 282 74.1
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 2.2e-101 372.9 280 74.6
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 3.7e-101 372.1 276 72.8
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.1e-100 370.5 286 71.3
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 1.4e-100 370.2 277 74.0
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 9.2e-100 367.5 272 72.8
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 2.7e-99 365.9 279 72.4
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 3.5e-99 365.5 282 70.2
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 1.0e-98 364.0 275 70.2
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.0e-98 364.0 285 70.9
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 3.0e-98 362.5 272 72.4
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 3.9e-98 362.1 272 71.7
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 5.0e-98 361.7 278 70.9
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 1.5e-97 360.1 275 68.7
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 2.8e-96 355.9 277 68.6
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 4.7e-96 355.1 279 71.3
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 6.2e-96 354.8 278 70.9
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 1.1e-95 354.0 249 74.7
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 8.9e-95 350.9 250 76.4
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.2e-94 350.5 250 76.0
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 1.5e-94 350.1 275 71.3
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 2.0e-94 349.7 276 68.1
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.6e-94 349.4 250 76.0
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 4.4e-94 348.6 281 68.7
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 5.8e-94 348.2 289 68.5
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 7.5e-94 347.8 274 70.4
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 2.9e-93 345.9 272 70.6
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 6.4e-93 344.7 278 70.1
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 8.3e-93 344.4 241 77.2
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 2.4e-92 342.8 270 68.9
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 3.2e-92 342.4 277 66.4
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 3.2e-92 342.4 276 67.4
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 9.2e-92 340.9 279 65.2
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 9.2e-92 340.9 205 83.9
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 1.2e-91 340.5 254 73.6
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 2.7e-91 339.3 258 71.3
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 1.7e-90 336.7 282 66.7
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 1.7e-90 336.7 236 73.7
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 2.3e-90 336.3 268 70.5
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 1.1e-89 334.0 243 71.2
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 1.1e-89 334.0 189 89.4
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.1e-89 334.0 280 67.1
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 1.9e-89 333.2 206 83.5
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 2.5e-89 332.8 188 88.8
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 2.5e-89 332.8 274 68.2
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 2.5e-89 332.8 206 83.5
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 3.3e-89 332.4 292 67.8
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 3.3e-89 332.4 296 64.5
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 9.5e-89 330.9 187 87.7
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 9.5e-89 330.9 268 69.8
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 9.5e-89 330.9 206 83.0
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 2.8e-88 329.3 205 82.4
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 4.7e-88 328.6 275 68.4
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 1.1e-87 327.4 270 68.9
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 3.1e-87 325.9 204 80.9
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 8.9e-87 324.3 271 67.5
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 8.9e-87 324.3 232 72.0
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 1.2e-86 323.9 220 75.5
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 1.2e-86 323.9 276 68.1
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 1.5e-86 323.6 266 68.4
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 2.6e-86 322.8 285 65.6
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 4.4e-86 322.0 191 86.4
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 4.4e-86 322.0 252 68.3
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 7.6e-86 321.2 215 79.1
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 9.9e-86 320.9 202 82.7
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 1.3e-85 320.5 213 78.9
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 4.9e-85 318.5 215 78.1
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 4.9e-85 318.5 215 78.1
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 4.9e-85 318.5 215 78.1
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 4.9e-85 318.5 231 73.6
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 6.4e-85 318.2 213 78.9
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 6.4e-85 318.2 249 70.7
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.1e-84 317.4 213 77.9
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 1.9e-84 316.6 215 78.1
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 1.9e-84 316.6 220 75.9
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 4.1e-84 315.5 214 78.0
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 1.6e-83 313.5 213 77.5
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 6.0e-83 311.6 213 76.5
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 7.8e-83 311.2 276 64.5
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 5.1e-82 308.5 278 61.9
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 1.1e-81 307.4 264 63.3
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 4.3e-81 305.4 213 76.5
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 4.0e-79 298.9 247 65.2
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 5.2e-79 298.5 187 80.7
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 1.5e-78 297.0 190 75.8
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 2.6e-78 296.2 185 77.8
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 3.3e-73 279.3 200 76.5
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 6.2e-72 275.0 195 68.7
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 1.9e-68 263.5 176 79.0
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 2.7e-67 259.6 196 65.3
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.1e-63 247.7 194 63.9
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 9.0e-63 244.6 188 73.4
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 3.4e-62 242.7 197 61.9
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 1.3e-58 230.7 174 69.0
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 4.5e-54 215.7 215 57.2
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 2.2e-48 196.8 180 61.7
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 2.4e-47 193.4 196 50.0
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 5.3e-47 192.2 110 85.5
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 2.0e-46 190.3 134 72.4
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 2.9e-45 186.4 199 48.2
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.8e-42 177.2 110 74.5
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 6.5e-37 158.7 188 44.7
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 7.2e-36 155.2 136 68.4
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.0e-26 124.8 82 73.2
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 4.4e-17 92.8 71 69.0
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 5.9e-14 82.4 50 78.0
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.3e-13 81.3 93 54.8
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 3.4e-09 66.6 44 72.7
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 1.7e-08 64.3 44 63.6
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.1e-07 61.6 65 55.4


User provided reference genes

Program Settings