Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G039200 Theobroma cacao HOM05D003418 ORTHO05D004105 1.2e-49 199.9 125 100.0
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 3.7e-16 88.6 129 44.2
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 8.3e-16 87.4 121 45.5
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 3.2e-15 85.5 127 42.5
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 7.0e-15 84.3 109 47.7
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 2.7e-14 82.4 122 40.2
Cpa.g.sc171.2 Carica papaya HOM05D003418 ORTHO05D004105 6.0e-14 81.3 131 42.7
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 6.0e-14 81.3 115 40.9
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 6.0e-14 81.3 126 44.4
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 1.0e-13 80.5 122 39.3
Rhsim08G0042100 Rhododendron simsii HOM05D003418 ORTHO05D004105 1.3e-13 80.1 125 43.2
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 3.9e-13 78.6 131 42.0
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 3.9e-13 78.6 117 41.0
Haze_14888 Corylus avellana HOM05D003418 ORTHO05D004105 5.1e-13 78.2 119 42.0
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 6.6e-13 77.8 113 43.4
Cfa007215 Carpinus fangiana HOM05D003418 ORTHO05D004105 8.6e-13 77.4 119 42.0
Ciclev10017602m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.1e-12 77.0 116 40.5
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 1.5e-12 76.6 124 42.7
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.9e-12 76.3 120 40.8
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 2.5e-12 75.9 116 42.2
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 2.5e-12 75.9 130 42.3
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 4.3e-12 75.1 115 41.7
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 5.6e-12 74.7 125 40.8
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 5.6e-12 74.7 115 40.0
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 7.3e-12 74.3 113 39.8
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 7.3e-12 74.3 120 39.2
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 9.5e-12 73.9 125 50.4
AUR62017773 Chenopodium quinoa HOM05D003418 ORTHO05D004105 9.5e-12 73.9 113 40.7
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 9.5e-12 73.9 122 48.4
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 1.2e-11 73.6 110 40.0
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 1.2e-11 73.6 107 42.1
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 1.2e-11 73.6 119 41.2
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.2e-11 73.6 118 43.2
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 1.2e-11 73.6 118 39.0
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 1.2e-11 73.6 118 41.5
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 1.6e-11 73.2 109 39.4
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 1.6e-11 73.2 116 42.2
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 1.6e-11 73.2 110 42.7
Eucgr.I01636 Eucalyptus grandis HOM05D003418 ORTHO05D004105 1.6e-11 73.2 115 40.9
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 1.6e-11 73.2 117 39.3
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 2.8e-11 72.4 115 36.5
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 2.8e-11 72.4 116 44.0
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 2.8e-11 72.4 117 48.7
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 2.8e-11 72.4 109 41.3
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 2.8e-11 72.4 119 41.2
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 2.8e-11 72.4 116 40.5
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.8e-11 72.4 122 38.5
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 3.6e-11 72.0 113 38.9
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 3.6e-11 72.0 119 37.8
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 3.6e-11 72.0 115 39.1
Glyma.19G093400 Glycine max HOM05D003418 ORTHO05D004105 3.6e-11 72.0 121 40.5
PSO017G5305 Papaver somniferum HOM05D003418 ORTHO05D004105 3.6e-11 72.0 117 41.0
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 3.6e-11 72.0 114 40.4
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 4.7e-11 71.6 130 38.5
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 4.7e-11 71.6 120 36.7
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 4.7e-11 71.6 114 42.1
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 4.7e-11 71.6 117 39.3
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 4.7e-11 71.6 118 39.0
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 4.7e-11 71.6 109 40.4
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 4.7e-11 71.6 115 39.1
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 6.2e-11 71.2 112 40.2
PSO478G5262 Papaver somniferum HOM05D003418 ORTHO05D004105 6.2e-11 71.2 117 41.0
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 6.2e-11 71.2 129 50.4
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 8.1e-11 70.9 116 39.7
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 8.1e-11 70.9 119 36.1
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 8.1e-11 70.9 109 40.4
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 1.1e-10 70.5 111 37.8
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.1e-10 70.5 124 37.9
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 1.1e-10 70.5 115 40.0
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 1.1e-10 70.5 109 40.4
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 1.4e-10 70.1 118 38.1
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 1.4e-10 70.1 110 37.3
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 1.4e-10 70.1 117 41.0
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 1.4e-10 70.1 112 42.0
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 1.4e-10 70.1 112 37.5
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 1.4e-10 70.1 109 40.4
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.8e-10 69.7 126 39.7
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 1.8e-10 69.7 124 50.0
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 1.8e-10 69.7 122 41.8
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 2.3e-10 69.3 121 37.2
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 2.3e-10 69.3 121 37.2
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 2.3e-10 69.3 121 37.2
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 2.3e-10 69.3 121 37.2
CANSAT64G1003 Cannabis sativa HOM05D003418 ORTHO05D004105 2.3e-10 69.3 137 45.3
CDE02G2290 Ceratophyllum demersum HOM05D003418 ORTHO05D004105 2.3e-10 69.3 137 38.0
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 2.3e-10 69.3 119 41.2
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 2.3e-10 69.3 109 39.4
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 2.3e-10 69.3 119 40.3
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.3e-10 69.3 117 38.5
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.3e-10 69.3 117 38.5
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 2.3e-10 69.3 117 38.5
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 3.1e-10 68.9 115 48.7
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 3.1e-10 68.9 111 36.9
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 3.1e-10 68.9 116 36.2
Hma1.2p1_1057F.1_g252730 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 3.1e-10 68.9 61 60.7
Actinidia04435 Actinidia chinensis HOM05D003418 ORTHO05D004105 4.0e-10 68.6 109 38.5
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 4.0e-10 68.6 111 36.9
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 4.0e-10 68.6 118 40.7
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 4.0e-10 68.6 118 38.1
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 4.0e-10 68.6 117 41.9
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 4.0e-10 68.6 109 34.9
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 5.2e-10 68.2 112 38.4
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 5.2e-10 68.2 120 40.0
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 5.2e-10 68.2 120 43.3
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 5.2e-10 68.2 112 36.6
MSTRG.492 Avicennia marina HOM05D003418 ORTHO05D004105 6.8e-10 67.8 108 38.0
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 6.8e-10 67.8 120 38.3
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 6.8e-10 67.8 115 38.3
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 6.8e-10 67.8 119 44.5
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 6.8e-10 67.8 109 36.7
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 6.8e-10 67.8 115 37.4
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 8.9e-10 67.4 118 38.1
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 8.9e-10 67.4 124 50.0
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 8.9e-10 67.4 116 40.5
arahy.Tifrunner.gnm1.ann1.V4TZMI Arachis hypogaea HOM05D003418 ORTHO05D004105 1.2e-09 67.0 127 46.5
arahy.Tifrunner.gnm1.ann1.XFVS70 Arachis hypogaea HOM05D003418 ORTHO05D004105 1.2e-09 67.0 127 46.5
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 1.2e-09 67.0 133 35.3
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.2e-09 67.0 113 39.8
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 1.2e-09 67.0 107 41.1
Sed0008687 Sechium edule HOM05D003418 ORTHO05D004105 1.2e-09 67.0 115 39.1
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 1.2e-09 67.0 119 34.5
TPR.G29062 Trifolium pratense HOM05D003418 ORTHO05D004105 1.2e-09 67.0 120 48.3
EL10Ac6g15425 Beta vulgaris HOM05D000704 ORTHO05D000526 1.5e-09 66.6 113 37.2
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.5e-09 66.6 118 37.3
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.5e-09 66.6 118 37.3
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.5e-09 66.6 118 37.3
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 2.0e-09 66.2 106 37.7
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 2.6e-09 65.9 112 39.3
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 2.6e-09 65.9 113 38.9
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 2.6e-09 65.9 110 39.1
SHI04041 Sapria himalayana HOM05D000704 ORTHO05D000526 2.6e-09 65.9 115 40.9
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 3.4e-09 65.5 112 39.3
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 3.4e-09 65.5 117 40.2
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 3.4e-09 65.5 123 36.6
Oeu049146.3 Olea europaea HOM05D003418 ORTHO05D004105 3.4e-09 65.5 117 35.9
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 3.4e-09 65.5 108 38.0
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 3.4e-09 65.5 115 37.4
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 3.4e-09 65.5 115 33.9
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 4.4e-09 65.1 123 36.6
Gohir.A05G310300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 4.4e-09 65.1 112 38.4
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 4.4e-09 65.1 123 36.6
Medtr7g028805 Medicago truncatula HOM05D003418 ORTHO05D004105 4.4e-09 65.1 123 39.0
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 4.4e-09 65.1 112 35.7
SalBow4G0150 Salvia bowleyana HOM05D003418 ORTHO05D004105 5.8e-09 64.7 111 36.0
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 7.5e-09 64.3 115 34.8
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 9.9e-09 63.9 112 33.0
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 9.9e-09 63.9 116 36.2
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 9.9e-09 63.9 107 41.1
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 1.3e-08 63.5 109 38.5
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.3e-08 63.5 117 39.3
SalBow7G0626 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.3e-08 63.5 109 39.4
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 1.3e-08 63.5 121 37.2
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 1.7e-08 63.2 120 38.3
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 2.2e-08 62.8 121 36.4
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 2.2e-08 62.8 111 52.3
Lj1g0017862 Lotus japonicus HOM05D003418 ORTHO05D004105 2.2e-08 62.8 122 41.8
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 2.9e-08 62.4 119 38.7
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 2.9e-08 62.4 110 35.5
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 2.9e-08 62.4 107 39.3
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 2.9e-08 62.4 107 37.4
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 4.9e-08 61.6 107 39.3
SGA_v2.0_scaffold253G45188 Striga asiatica HOM05D003418 ORTHO05D004105 4.9e-08 61.6 124 38.7
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 6.4e-08 61.2 120 41.7
SalBow4G1936 Salvia bowleyana HOM05D003418 ORTHO05D004105 6.4e-08 61.2 111 34.2
Lalb_Chr23g0278191 Lupinus albus HOM05D003418 ORTHO05D004105 8.3e-08 60.8 100 38.0
CSS0019501 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.1e-07 60.5 124 38.7
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.1e-07 60.5 117 38.5
Os09g0507400 Oryza sativa ssp. japonica HOM05D003418 ORTHO05D004105 1.1e-07 60.5 111 36.0
Rhsim12G0093300 Rhododendron simsii HOM05D003418 ORTHO05D004105 1.4e-07 60.1 119 33.6
HPP92_025259 Vanilla planifolia HOM05D003418 ORTHO05D004105 2.4e-07 59.3 112 32.1
Peaxi162Scf00518g00025 Petunia axillaris HOM05D003418 ORTHO05D004105 4.1e-07 58.5 125 43.2
Zm00001eb102460 Zea mays HOM05D003418 ORTHO05D004105 5.4e-07 58.2 107 34.6
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 7.1e-07 57.8 118 35.6
unitig_26.g10403 Utricularia gibba HOM05D003418 ORTHO05D004105 7.1e-07 57.8 62 45.2
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 1.6e-06 56.6 67 44.8
Lalb_Chr12g0206031 Lupinus albus HOM05D003418 ORTHO05D004105 2.7e-06 55.8 108 36.1
SGA_v2.0_scaffold391G50621 Striga asiatica HOM05D003418 ORTHO05D004105 6.0e-06 54.7 118 34.7
Lsat_1_v5_gn_2_93281 Lactuca sativa HOM05D003418 ORTHO05D004105 7.8e-06 54.3 114 44.7
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 7.8e-06 54.3 66 48.5


User provided reference genes

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