Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G036200 Theobroma cacao HOM05D002727 ORTHO05D002856 4.6e-83 311.2 161 100.0
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 2.7e-27 125.9 191 41.9
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.3e-26 123.6 200 43.0
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 1.1e-25 120.6 192 43.8
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 2.5e-25 119.4 202 41.1
Sabra17G0092700 Salix brachista HOM05D002727 ORTHO05D002856 9.7e-25 117.5 201 41.8
Potri.017G111600 Populus trichocarpa HOM05D002727 ORTHO05D002856 2.8e-24 115.9 203 40.4
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 8.2e-24 114.4 195 41.5
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 1.0e-21 107.5 202 39.1
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 3.6e-19 99.0 187 37.4
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 4.7e-19 98.6 194 35.6
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 7.9e-19 97.8 192 34.9
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 2.3e-18 96.3 191 36.1
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 2.3e-18 96.3 176 36.4
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 3.0e-18 95.9 196 33.7
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.9e-18 95.5 202 35.1
RcHm_v2.0_Chr2g0175581 Rosa chinensis HOM05D002727 ORTHO05D002856 3.9e-18 95.5 190 38.4
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 5.1e-18 95.1 196 33.2
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 2.0e-17 93.2 195 36.9
Aqoxy1G00996 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 2.6e-17 92.8 192 32.3
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 7.4e-17 91.3 205 34.1
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 7.4e-17 91.3 186 32.3
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 7.4e-17 91.3 190 33.2
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 7.4e-17 91.3 176 35.2
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 1.7e-16 90.1 194 34.5
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 1.7e-16 90.1 192 33.9
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 4.8e-16 88.6 212 34.4
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 4.8e-16 88.6 206 35.4
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 6.3e-16 88.2 224 32.6
FvH4_6g53540 Fragaria vesca HOM05D002727 ORTHO05D002856 6.3e-16 88.2 193 36.3
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 6.3e-16 88.2 193 30.6
Manes.14G135600 Manihot esculenta HOM05D002727 ORTHO05D002856 6.3e-16 88.2 184 34.8
BcaB06g27576 Brassica carinata HOM05D002727 ORTHO05D002856 8.2e-16 87.8 211 35.1
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 8.2e-16 87.8 211 35.1
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 8.2e-16 87.8 211 35.1
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 8.2e-16 87.8 192 33.3
MD09G1010600 Malus domestica HOM05D002727 ORTHO05D002856 1.1e-15 87.4 212 32.5
Aa31LG1G13580 Aethionema arabicum HOM05D002727 ORTHO05D002856 1.8e-15 86.7 226 32.7
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 1.8e-15 86.7 199 34.7
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.8e-15 86.7 201 32.8
THA.LOC104824571 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 1.8e-15 86.7 262 30.5
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 2.4e-15 86.3 190 32.6
FAN14G5438 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.1e-15 85.9 193 35.8
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 4.1e-15 85.5 212 34.4
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 4.1e-15 85.5 197 31.5
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 4.1e-15 85.5 190 35.3
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 4.1e-15 85.5 188 34.6
PSO017G4651 Papaver somniferum HOM05D002727 ORTHO05D002856 4.1e-15 85.5 169 37.9
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 5.3e-15 85.1 203 33.5
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 5.3e-15 85.1 190 35.8
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 5.3e-15 85.1 196 32.7
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 6.9e-15 84.7 212 34.0
FAN05G4306 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.1e-15 84.3 193 35.8
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 1.2e-14 84.0 189 34.4
Thhalv10028170m.g Eutrema salsugineum HOM05D002727 ORTHO05D002856 1.2e-14 84.0 223 31.4
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 1.5e-14 83.6 190 31.6
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 1.5e-14 83.6 191 33.5
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 2.0e-14 83.2 199 33.7
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 2.0e-14 83.2 196 33.2
PSO478G1911 Papaver somniferum HOM05D002727 ORTHO05D002856 2.6e-14 82.8 202 34.2
AT5G40940 Arabidopsis thaliana HOM05D002727 ORTHO05D002856 3.4e-14 82.4 224 31.2
Sp7g01010 Schrenkiella parvula HOM05D002727 ORTHO05D002856 3.4e-14 82.4 221 32.1
PSO478G1097 Papaver somniferum HOM05D002727 ORTHO05D002856 4.5e-14 82.0 202 32.2
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 4.5e-14 82.0 191 30.9
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 5.9e-14 81.6 195 32.3
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 5.9e-14 81.6 195 32.3
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 5.9e-14 81.6 195 32.3
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 5.9e-14 81.6 207 30.9
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 7.7e-14 81.3 195 33.3
Carub.0007s3456 Capsella rubella HOM05D002727 ORTHO05D002856 1.0e-13 80.9 225 31.1
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-13 80.5 193 32.1
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 1.3e-13 80.5 193 29.5
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.3e-13 80.5 195 30.3
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 1.3e-13 80.5 202 32.2
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 1.3e-13 80.5 184 30.4
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 1.3e-13 80.5 194 32.0
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.3e-13 80.5 183 34.4
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.2e-13 79.7 193 31.6
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 2.2e-13 79.7 192 30.7
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 3.8e-13 79.0 190 31.6
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 5.0e-13 78.6 186 35.5
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 8.5e-13 77.8 180 33.9
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 1.1e-12 77.4 193 30.1
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 1.4e-12 77.0 185 33.5
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 1.4e-12 77.0 199 31.2
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 1.9e-12 76.6 195 31.3
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 1.9e-12 76.6 193 30.6
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 1.9e-12 76.6 200 30.0
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.5e-12 76.3 196 33.2
THA.LOC104824147 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 2.5e-12 76.3 177 33.9
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 3.2e-12 75.9 156 39.7
AL7G48630 Arabidopsis lyrata HOM05D002727 ORTHO05D002856 4.2e-12 75.5 223 30.5
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 5.5e-12 75.1 187 34.2
FAN10G0099 Fragaria x ananassa HOM05D000147 ORTHO05D007841 5.5e-12 75.1 175 34.3
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 5.5e-12 75.1 180 30.0
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 7.2e-12 74.7 195 30.8
ECA232G4731 Erigeron canadensis HOM05D002727 ORTHO05D002856 9.4e-12 74.3 178 31.5
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 1.2e-11 73.9 196 33.2
Cpa.g.sc65.122 Carica papaya HOM05D002727 ORTHO05D002856 1.2e-11 73.9 186 31.7
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 1.6e-11 73.6 185 30.3
ECA233G4969 Erigeron canadensis HOM05D002727 ORTHO05D002856 1.6e-11 73.6 194 30.4
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 1.6e-11 73.6 203 29.1
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.1e-11 73.2 185 29.7
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 2.1e-11 73.2 200 30.5
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 3.6e-11 72.4 193 29.0
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.1e-11 71.6 192 31.2
FAN14G2593 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.0e-10 70.9 202 30.2
CiPaw.05G247600 Carya illinoinensis HOM05D002727 ORTHO05D002856 1.4e-10 70.5 164 34.1
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 1.4e-10 70.5 201 29.9
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 1.8e-10 70.1 197 32.0
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.3e-10 69.7 197 31.5
Psat2g129760 Pisum sativum HOM05D002727 ORTHO05D002856 2.3e-10 69.7 207 31.9
Actinidia26664 Actinidia chinensis HOM05D002727 ORTHO05D002856 3.0e-10 69.3 132 35.6
FvH4_6g20740 Fragaria vesca HOM05D002727 ORTHO05D002856 3.0e-10 69.3 194 30.4
unitig_27.g25263 Utricularia gibba HOM05D002727 ORTHO05D002856 3.0e-10 69.3 199 33.2
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 3.9e-10 68.9 200 31.5
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.2e-10 68.6 197 29.9
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 5.2e-10 68.6 206 30.6
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 8.8e-10 67.8 191 29.3
Peaxi162Scf00205g00023 Petunia axillaris HOM05D002727 ORTHO05D002856 8.8e-10 67.8 182 32.4
FAN05G5197 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.1e-09 67.4 204 29.9
FAN05G5380 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.1e-09 67.4 202 29.7
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.1e-09 67.4 197 29.9
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.5e-09 67.0 188 31.9
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.5e-09 67.0 201 29.4
Nitab4.5_0006134g0020 Nicotiana tabacum HOM05D002727 ORTHO05D002856 1.5e-09 67.0 186 31.7
FAN06G1995 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.0e-09 66.6 178 31.5
Eucgr.G02208 Eucalyptus grandis HOM05D002727 ORTHO05D002856 3.3e-09 65.9 171 29.8
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 3.3e-09 65.9 178 30.9
FAN02G0051 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.3e-09 65.9 205 29.8
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 3.3e-09 65.9 200 29.0
CAN.G185.21 Capsicum annuum HOM05D002727 ORTHO05D002856 4.4e-09 65.5 173 31.2
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 4.4e-09 65.5 184 31.0
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 4.4e-09 65.5 184 31.0
Lj2g0009169 Lotus japonicus HOM05D002727 ORTHO05D002856 1.7e-08 63.5 191 28.8
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 2.2e-08 63.2 194 31.4
FAN02G1828 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.2e-08 63.2 79 53.2
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 2.8e-08 62.8 122 37.7
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 2.8e-08 62.8 184 29.9
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 3.7e-08 62.4 194 32.5
Medtr5g044170 Medicago truncatula HOM05D002727 ORTHO05D002856 3.7e-08 62.4 203 29.6
Atru.chr11.406 Acer truncatum HOM05D002727 ORTHO05D002856 4.8e-08 62.0 75 48.0
arahy.Tifrunner.gnm1.ann1.AV0RHQ Arachis hypogaea HOM05D002727 ORTHO05D002856 4.8e-08 62.0 200 30.0
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 4.8e-08 62.0 203 30.5
arahy.Tifrunner.gnm1.ann1.PT8N4B Arachis hypogaea HOM05D002727 ORTHO05D002856 1.1e-07 60.8 200 29.5
Ca_24568_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 1.1e-07 60.8 201 28.9
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 2.4e-07 59.7 199 30.7
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 4.1e-07 58.9 183 30.1
PSO478G0105 Papaver somniferum HOM05D002727 ORTHO05D002856 4.1e-07 58.9 174 32.2
SGA_v2.0_scaffold170G38831 Striga asiatica HOM05D002727 ORTHO05D002856 4.1e-07 58.9 193 29.5
AUR62039553 Chenopodium quinoa HOM05D002727 ORTHO05D002856 1.2e-06 57.4 177 32.8
Dinv05150 Davidia involucrata HOM05D002727 ORTHO05D002856 5.9e-06 55.1 140 27.9
FAN06G1877 Fragaria x ananassa HOM05D002727 ORTHO05D002856 7.7e-06 54.7 76 43.4
FAN10G2889 Fragaria x ananassa HOM05D002727 ORTHO05D002856 7.7e-06 54.7 76 43.4
TPR.G24442 Trifolium pratense HOM05D002727 ORTHO05D002856 7.7e-06 54.7 200 28.5


User provided reference genes

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