Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.4e-117 426.4 224 100.0
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 2.4e-74 282.7 227 67.8
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 2.0e-73 279.6 281 57.3
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 3.7e-59 232.3 223 58.3
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 3.7e-59 232.3 223 58.3
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.7e-56 223.4 226 51.8
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 4.7e-54 215.3 226 51.8
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 8.9e-53 211.1 228 50.9
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.5e-52 210.3 224 50.0
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.6e-52 209.5 223 50.2
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 1.3e-51 207.2 223 58.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.7e-51 206.8 228 50.9
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 2.9e-51 206.1 221 49.3
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 8.4e-51 204.5 229 48.5
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.1e-50 204.1 222 49.5
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.9e-50 203.4 220 48.2
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.2e-50 202.2 225 47.1
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 4.2e-50 202.2 220 50.5
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 7.1e-50 201.4 222 51.4
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.2e-49 200.7 224 53.6
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.7e-48 196.8 222 47.7
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.3e-48 196.4 228 48.7
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 2.3e-48 196.4 223 48.9
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.3e-48 196.4 224 52.7
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.3e-48 196.4 228 46.5
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.3e-47 191.4 227 48.0
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 7.3e-47 191.4 224 47.8
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 9.6e-47 191.0 237 47.7
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 3.6e-46 189.1 224 46.9
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 8.1e-46 188.0 237 46.4
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.1e-46 188.0 221 53.4
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 6.9e-45 184.9 221 44.8
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 6.9e-45 184.9 226 46.0
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.0e-44 183.3 231 46.3
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 9.9e-44 181.0 237 45.6
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.4e-43 178.3 226 50.0
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 1.1e-42 177.6 122 67.2
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 5.4e-42 175.3 229 45.0
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 9.3e-42 174.5 222 44.6
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.1e-41 173.3 234 42.7
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 2.7e-41 172.9 226 47.8
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 3.5e-41 172.6 221 43.9
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.3e-40 169.9 133 60.9
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.5e-39 167.2 223 42.6
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 2.5e-39 166.4 236 41.1
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.5e-39 166.4 232 40.9
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 7.4e-39 164.9 240 44.2
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 7.4e-39 164.9 233 44.6
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 2.8e-38 162.9 227 41.9
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 8.1e-38 161.4 231 44.6
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.1e-37 161.0 230 46.5
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 7.6e-36 154.8 230 43.5
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 9.9e-36 154.5 238 42.9
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.9e-36 154.5 117 65.0
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.2e-35 153.3 223 42.6
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.2e-35 153.3 136 57.4
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.9e-35 152.1 240 40.0
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.4e-34 150.6 214 45.3
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.2e-34 149.4 197 44.2
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 7.1e-34 148.3 226 39.8
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 9.3e-34 147.9 227 42.7
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 9.3e-34 147.9 256 37.1
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 9.3e-34 147.9 256 37.1
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.1e-33 146.7 226 39.8
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 2.1e-33 146.7 122 57.4
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.1e-33 146.7 221 42.5
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.7e-33 146.4 124 57.3
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 4.6e-33 145.6 233 39.9
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 6.0e-33 145.2 231 40.3
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 7.9e-33 144.8 131 54.2
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 7.9e-33 144.8 231 40.3
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.8e-32 143.7 223 39.0
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 3.0e-32 142.9 225 37.8
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 3.0e-32 142.9 216 41.7
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.0e-32 142.9 139 52.5
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 3.9e-32 142.5 223 39.9
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 6.7e-32 141.7 137 51.8
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 6.7e-32 141.7 121 56.2
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.9e-31 140.2 130 54.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.5e-31 139.8 227 44.9
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 2.5e-31 139.8 141 49.6
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 2.5e-31 139.8 129 52.7
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.5e-31 139.8 102 63.7
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 3.3e-31 139.4 130 53.8
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.3e-30 137.5 130 53.1
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.3e-30 137.5 138 50.7
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 3.7e-30 136.0 135 51.1
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 6.2e-30 135.2 134 53.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.1e-29 134.4 223 36.8
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.4e-29 134.0 93 63.4
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.4e-29 134.0 125 51.2
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.8e-29 133.7 227 37.9
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.8e-29 133.7 134 53.0
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.4e-29 133.3 122 55.7
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 4.0e-29 132.5 146 52.1
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.0e-29 132.5 122 54.9
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.0e-29 131.3 122 54.9
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.2e-28 131.0 228 44.3
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 2.0e-28 130.2 99 59.6
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-28 129.4 118 54.2
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-28 129.4 118 54.2
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-28 129.4 122 52.5
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 4.5e-28 129.0 135 52.6
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 5.8e-28 128.6 225 46.2
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 5.8e-28 128.6 135 51.1
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 7.6e-28 128.3 122 54.1
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-27 127.5 122 53.3
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 8.4e-27 124.8 102 57.8
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 1.1e-26 124.4 85 63.5
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.9e-26 123.6 228 44.7
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.9e-26 123.6 239 37.2
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.9e-26 123.6 131 48.1
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 2.5e-26 123.2 231 38.5
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.2e-26 122.9 118 52.5
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 5.5e-26 122.1 217 36.4
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 1.8e-24 117.1 237 37.1
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.1e-23 114.4 146 46.6
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 1.9e-23 113.6 146 45.2
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 6.3e-22 108.6 88 54.5
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.4e-21 107.5 135 48.1
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.8e-21 107.1 138 47.1
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 3.1e-21 106.3 137 42.3
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 3.1e-21 106.3 137 46.7
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 4.1e-21 105.9 138 46.4
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 9.0e-21 104.8 137 46.7
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 9.0e-21 104.8 137 46.7
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 3.4e-20 102.8 84 56.0
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 3.4e-20 102.8 84 56.0
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 3.4e-20 102.8 84 56.0
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 5.9e-20 102.1 137 43.8
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 7.6e-20 101.7 137 42.3
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 7.6e-20 101.7 137 42.3
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 2.2e-19 100.1 84 56.0
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 2.2e-19 100.1 137 43.8
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 2.2e-19 100.1 137 43.8
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 2.2e-19 100.1 84 56.0
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.8e-19 99.4 136 46.3
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.1e-18 97.8 136 45.6
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-18 97.1 137 42.3
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.9e-18 97.1 137 42.3
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 2.5e-18 96.7 137 44.5
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 7.2e-18 95.1 96 50.0
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 9.3e-18 94.7 138 42.8
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 9.3e-18 94.7 96 50.0
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 9.3e-18 94.7 96 50.0
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 9.3e-18 94.7 132 43.2
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.7e-17 93.2 134 40.3
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 4.6e-17 92.4 87 54.0
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 3.0e-16 89.7 96 47.9
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.4e-13 80.9 74 52.7
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.8e-13 80.5 121 40.5
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 3.1e-13 79.7 130 41.5
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.3e-13 79.0 208 36.5
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 5.3e-13 79.0 230 32.2
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 9.0e-13 78.2 129 40.3
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 4.5e-12 75.9 61 55.7
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.0e-11 74.7 84 39.3
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 2.2e-11 73.6 250 31.6
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.9e-11 73.2 84 45.2
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 5.5e-10 68.9 144 35.4
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 9.4e-10 68.2 223 28.7
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 2.1e-09 67.0 48 66.7
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 1.4e-08 64.3 231 30.3
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 5.1e-08 62.4 123 38.2
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.6e-07 60.1 135 34.1
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 3.3e-07 59.7 139 35.3
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 4.4e-07 59.3 227 28.2
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 7.4e-07 58.5 231 28.1
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 9.7e-07 58.2 225 28.9
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 6.3e-06 55.5 130 34.6


User provided reference genes

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