Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 0.0e+00 1359.0 694 100.0
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 0.0e+00 1172.9 720 84.0
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 0.0e+00 1171.8 720 83.9
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 0.0e+00 1169.5 720 82.9
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 0.0e+00 1140.9 700 84.3
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 0.0e+00 1139.4 742 80.2
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 1.0e-280 969.9 716 69.0
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 1.1e-277 959.9 722 68.7
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 2.5e-271 938.7 722 66.6
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 1.4e-269 932.9 724 67.4
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 8.9e-269 930.2 714 66.5
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 2.2e-267 925.6 712 67.7
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 2.4e-266 922.2 714 66.9
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 3.5e-265 918.3 697 68.3
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 7.8e-265 917.1 712 66.4
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 2.3e-264 915.6 712 66.7
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 2.3e-264 915.6 724 65.3
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 1.1e-261 906.7 741 63.0
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 9.9e-260 900.2 712 63.9
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 2.9e-259 898.7 713 65.4
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 2.9e-259 898.7 712 65.9
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 1.9e-258 896.0 712 65.0
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 7.1e-258 894.0 710 64.4
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 7.1e-258 894.0 712 63.8
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 1.6e-257 892.9 710 64.8
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 3.5e-257 891.7 708 65.3
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 3.0e-256 888.6 716 66.3
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 2.5e-255 885.6 712 64.9
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.5e-255 885.6 744 61.6
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 7.4e-255 884.0 741 61.3
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 7.4e-255 884.0 714 64.4
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 9.6e-255 883.6 750 60.4
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 4.8e-254 881.3 741 61.1
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 1.1e-253 880.2 705 64.3
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 4.0e-253 878.2 722 61.2
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 1.9e-250 869.4 652 67.6
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 2.7e-249 865.5 696 64.4
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 2.3e-248 862.4 722 60.1
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 2.3e-248 862.4 693 64.8
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 3.0e-248 862.1 703 62.9
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 1.5e-247 859.8 711 61.2
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 1.9e-247 859.4 722 60.4
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 7.4e-247 857.4 715 62.5
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 9.0e-245 850.5 703 62.3
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 7.6e-244 847.4 681 64.0
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 1.0e-243 847.0 710 61.4
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 1.0e-243 847.0 700 63.0
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 1.8e-240 836.3 711 60.5
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 8.2e-238 827.4 647 66.3
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 1.4e-237 826.6 682 61.1
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 1.5e-236 823.2 651 65.1
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 9.3e-234 813.9 714 59.8
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 1.3e-232 810.1 707 60.4
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 1.8e-232 809.7 643 63.1
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 8.7e-232 807.4 699 61.2
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 1.5e-231 806.6 718 59.5
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.5e-231 806.6 719 58.0
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 1.3e-230 803.5 708 59.5
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 4.8e-230 801.6 694 60.1
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 8.2e-230 800.8 727 56.9
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 1.8e-229 799.7 726 58.0
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 5.3e-229 798.1 699 60.7
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 6.9e-229 797.7 703 59.5
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 1.3e-227 793.5 708 58.1
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 2.9e-227 792.3 712 58.1
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 1.1e-226 790.4 713 58.3
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 4.2e-226 788.5 713 57.9
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 1.0e-224 783.9 709 57.5
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 3.9e-224 781.9 693 59.0
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 2.2e-222 776.2 713 59.7
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 5.3e-221 771.5 619 64.1
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 2.0e-220 769.6 695 59.4
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 4.5e-220 768.5 721 56.4
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 2.9e-219 765.8 708 57.3
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 2.5e-218 762.7 724 57.6
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 2.1e-217 759.6 674 59.5
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 3.6e-217 758.8 602 64.6
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 6.1e-217 758.1 705 58.9
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 5.2e-216 755.0 607 63.6
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 8.8e-216 754.2 711 58.2
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 1.1e-215 753.8 705 58.4
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 2.6e-215 752.7 703 58.3
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 3.3e-215 752.3 720 57.1
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 4.4e-215 751.9 703 58.5
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 2.2e-214 749.6 719 57.4
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 7.0e-213 744.6 710 57.3
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 1.2e-212 743.8 721 57.0
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 2.0e-212 743.0 718 57.0
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 6.5e-211 738.0 727 56.1
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 4.2e-210 735.3 703 56.3
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.1e-209 733.0 627 62.0
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 9.7e-207 724.2 707 56.7
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 2.7e-204 716.1 681 57.7
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 7.7e-204 714.5 707 55.6
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 3.8e-203 712.2 736 52.2
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 2.5e-202 709.5 776 51.2
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 4.4e-199 698.7 597 62.3
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 6.5e-195 684.9 601 60.6
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 6.1e-193 678.3 714 51.4
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 3.6e-185 652.5 724 52.3
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 2.4e-181 639.8 707 50.2
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 2.4e-181 639.8 723 48.4
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 6.2e-177 625.2 516 62.6
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 1.0e-171 607.8 708 49.6
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 4.7e-169 599.0 420 72.4
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 5.4e-165 585.5 614 51.1
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 3.6e-161 572.8 618 53.9
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 6.4e-150 535.4 522 57.3
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.4e-141 507.7 426 61.3
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 2.1e-132 477.2 497 53.9
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 2.3e-131 473.8 706 43.9
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 1.3e-105 388.3 759 36.2
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 2.4e-104 384.0 758 34.6
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 1.1e-96 358.6 697 34.9
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 5.0e-86 323.2 451 41.5
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 2.5e-85 320.9 347 49.0
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 5.5e-85 319.7 334 50.9
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 2.3e-70 271.2 299 53.8
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.7e-62 245.0 233 54.1
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 6.6e-54 216.5 272 49.3
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 8.9e-51 206.1 301 42.9
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 2.4e-48 198.0 203 45.8
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 6.6e-46 189.9 167 60.5
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 2.7e-39 167.9 432 30.6
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 7.6e-34 149.8 153 54.9
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 4.3e-29 134.0 129 55.0
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 1.8e-27 128.6 450 27.6
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 7.9e-23 113.2 95 61.1
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 1.5e-21 109.0 85 63.5
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 1.3e-20 105.9 276 32.6
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 8.1e-20 103.2 62 79.0
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 1.8e-11 75.5 87 48.3
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 2.4e-11 75.1 107 45.8
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 7.1e-08 63.5 61 60.7


User provided reference genes

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