Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 3619.3 1858 100.0
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 3001.5 1859 83.2
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 2761.5 1709 83.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 2506.9 1858 72.8
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2470.3 1866 68.2
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2429.8 1858 67.7
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2357.0 1860 65.8
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2357.0 1863 66.6
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2355.5 1858 65.9
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2318.9 1857 64.7
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 2305.4 1941 63.3
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 2288.8 1858 64.2
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 2288.5 1857 64.5
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 2274.6 1860 63.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2273.8 1858 64.0
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 2260.0 1858 63.2
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 2253.8 1859 62.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 2220.7 1859 62.3
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 2167.5 2002 58.7
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 2162.9 2043 57.7
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2142.5 1858 60.8
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2137.1 1858 60.7
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2122.8 1859 60.5
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 2120.1 1989 58.1
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 2104.7 1863 58.9
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 2101.2 1860 58.1
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 2098.2 1861 58.8
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 2092.4 1967 58.1
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 2067.7 1857 59.1
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 2062.0 1700 63.0
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 2060.4 1857 57.2
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 2059.3 1868 59.0
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2040.4 1857 57.1
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 2038.8 1865 58.1
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 2033.8 1874 56.9
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 2026.1 1861 57.2
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 2020.4 1858 56.5
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 2013.8 1861 57.0
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 2008.0 1864 57.2
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2004.2 1891 55.9
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 2002.6 1857 55.7
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1990.3 1863 56.9
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1986.1 1855 56.7
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1985.3 1857 56.5
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1983.8 1857 56.4
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1971.8 1512 67.3
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1970.3 1857 56.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1969.5 1857 56.1
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1966.0 1868 56.3
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1957.6 1855 55.7
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1953.3 1867 56.2
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1952.6 1863 55.4
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1944.1 1858 55.5
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1939.5 1855 55.7
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1938.7 1858 55.3
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1931.8 1858 55.5
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1931.8 1858 55.5
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1931.8 1858 55.5
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1926.8 1860 57.0
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1919.4 1878 55.2
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1916.7 1881 54.9
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1890.9 1862 54.8
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1875.5 1865 54.6
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1852.8 1503 64.0
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1848.6 1727 55.8
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1830.8 1881 52.8
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1815.0 1857 52.9
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1813.1 1879 52.9
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1810.0 1700 56.2
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1808.9 1868 52.8
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1795.4 1453 64.0
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1723.8 1967 49.1
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1702.6 1888 49.8
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1665.6 1650 54.1
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1634.8 1891 49.4
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1613.2 1928 47.0
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 0.0e+00 1602.8 970 85.5
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1586.2 1861 47.5
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1557.7 1861 46.7
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1480.7 1878 46.1
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1469.5 1365 56.0
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1416.0 1902 44.5
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1407.1 1354 54.6
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1374.8 1372 54.9
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1354.7 1223 57.6
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1353.6 2064 40.5
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1319.3 1307 55.2
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1298.1 1869 41.5
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1262.7 1180 57.7
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1229.5 1871 41.3
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 6.9e-284 981.9 942 55.6
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.4e-276 956.8 1040 49.3
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 5.5e-273 945.7 836 60.2
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 2.0e-267 927.2 729 66.5
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.8e-260 904.0 644 70.0
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.7e-256 890.2 707 68.3
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 2.7e-243 847.0 943 51.6
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 7.1e-220 769.2 640 63.0
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.9e-217 761.1 1947 30.7
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.3e-213 748.4 1161 41.4
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 3.0e-210 737.3 828 50.4
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.3e-205 721.8 845 47.5
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.4e-199 701.0 456 82.0
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.8e-197 693.7 589 62.3
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.6e-193 679.1 617 57.9
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.3e-185 654.1 647 54.3
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 5.5e-180 636.7 786 44.5
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.8e-167 595.1 1842 28.7
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.8e-160 571.2 539 56.4
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 6.8e-130 470.3 346 69.4
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 9.8e-129 466.5 449 58.4
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 2.2e-128 465.3 427 57.4
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 6.4e-128 463.8 420 57.1
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.7e-126 458.4 370 63.0
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.7e-125 455.7 633 42.5
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 2.7e-118 431.8 431 54.8
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.0e-117 427.6 439 51.7
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.0e-106 391.3 347 59.1
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.7e-102 378.6 354 58.2
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 6.0e-94 350.9 337 53.7
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.9e-92 345.9 400 50.5
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.3e-83 316.6 442 42.3
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.2e-81 310.1 620 33.9
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-75 289.7 210 71.4
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.8e-74 286.2 330 45.5
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 2.4e-74 285.8 303 52.5
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.0e-73 282.7 546 35.9
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 7.1e-71 274.2 257 57.6
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-68 266.9 194 72.2
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 7.4e-68 264.2 275 51.6
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.8e-61 243.0 266 51.1
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.3e-59 236.9 226 58.0
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 8.2e-59 234.2 211 60.2
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.7e-54 219.2 187 59.9
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 9.7e-52 210.7 290 45.2
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 4.1e-50 205.3 825 26.1
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 2.6e-49 202.6 147 68.0
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 5.9e-49 201.4 142 73.2
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-47 197.2 156 62.8
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.6e-46 192.2 189 57.1
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 9.7e-44 184.1 219 49.8
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 2.8e-43 182.6 176 56.8
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 1.0e-40 174.1 184 50.0
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 6.5e-40 171.4 132 63.6
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 2.5e-39 169.5 132 63.6
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 5.5e-39 168.3 199 48.7
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.0e-37 164.1 155 58.1
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.2e-36 160.6 926 24.2
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.1e-34 152.1 131 61.1
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.2e-31 142.1 226 41.6
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.5e-31 141.7 139 56.1
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.1e-30 139.8 147 51.7
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 1.0e-29 137.5 137 54.0
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.7e-28 131.7 104 60.6
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 9.8e-28 131.0 127 52.0
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 3.7e-27 129.0 122 50.0
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 1.2e-25 124.0 103 61.2
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 3.2e-23 115.9 87 62.1
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.6e-22 113.6 175 37.1
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.8e-21 107.8 109 53.2
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 9.8e-20 104.4 75 61.3
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 4.5e-17 95.5 121 41.3
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 7.3e-15 88.2 53 81.1
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 2.1e-14 86.7 93 45.2
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 2.0e-12 80.1 121 38.0
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 7.5e-12 78.2 52 69.2
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 8.3e-11 74.7 149 36.9
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 2.4e-10 73.2 150 36.7
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 9.2e-10 71.2 87 51.7
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 2.0e-09 70.1 79 41.8
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 3.5e-09 69.3 60 50.0
FAN06G2394 Fragaria x ananassa HOM05D000021 ORTHO05D000010 3.5e-09 69.3 74 45.9
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 7.8e-09 68.2 64 54.7
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 7.8e-09 68.2 61 55.7
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 1.0e-08 67.8 74 44.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-08 67.4 51 58.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-08 67.4 51 58.8
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.0e-08 66.2 61 55.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 6.6e-08 65.1 129 36.4


User provided reference genes

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