Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 2.8e-64 248.4 125 100.0
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.7e-56 222.6 125 87.2
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 4.1e-55 218.0 125 86.4
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 3.6e-51 204.9 142 75.4
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 1.8e-50 202.6 125 80.8
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 5.2e-50 201.1 124 80.6
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 8.8e-50 200.3 125 79.2
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 9.7e-49 196.8 119 79.8
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 9.7e-49 196.8 119 79.8
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 1.3e-48 196.4 125 79.2
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 1.7e-48 196.1 118 80.5
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 2.2e-48 195.7 125 76.8
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 3.7e-48 194.9 121 78.5
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 1.8e-47 192.6 125 74.4
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 3.1e-47 191.8 125 77.6
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 3.1e-47 191.8 125 77.6
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 3.1e-47 191.8 118 79.7
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 4.1e-47 191.4 125 76.0
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 5.3e-47 191.0 120 78.3
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 1.6e-46 189.5 122 76.2
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 2.7e-46 188.7 107 86.9
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 2.7e-46 188.7 118 78.8
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 4.5e-46 188.0 125 75.2
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 2.2e-45 185.7 118 78.0
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 2.9e-45 185.3 125 72.8
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 5.0e-45 184.5 125 71.2
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 5.0e-45 184.5 125 71.2
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 8.5e-45 183.7 118 77.1
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 8.5e-45 183.7 118 77.1
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 8.5e-45 183.7 119 74.8
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 8.5e-45 183.7 125 70.4
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 1.1e-44 183.3 119 75.6
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 1.1e-44 183.3 118 76.3
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 1.5e-44 183.0 125 71.2
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.5e-44 182.2 118 76.3
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 2.5e-44 182.2 119 73.1
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 2.5e-44 182.2 120 75.0
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 4.2e-44 181.4 125 70.4
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 5.5e-44 181.0 120 73.3
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 7.2e-44 180.6 118 76.3
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 7.2e-44 180.6 119 73.9
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 9.4e-44 180.3 125 70.4
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 9.4e-44 180.3 125 70.4
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 1.2e-43 179.9 125 69.6
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 1.2e-43 179.9 125 69.6
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 1.2e-43 179.9 125 69.6
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 1.2e-43 179.9 118 75.4
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 1.6e-43 179.5 125 69.6
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 2.1e-43 179.1 118 72.9
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 2.1e-43 179.1 120 73.3
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 2.1e-43 179.1 125 69.6
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.1e-43 179.1 116 76.7
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 3.6e-43 178.3 116 76.7
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 6.1e-43 177.6 119 73.1
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 6.1e-43 177.6 120 75.8
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 6.1e-43 177.6 125 69.6
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 6.1e-43 177.6 118 73.7
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 6.1e-43 177.6 118 73.7
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 6.1e-43 177.6 118 72.0
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 8.0e-43 177.2 118 72.0
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 8.0e-43 177.2 125 68.8
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 8.0e-43 177.2 125 68.8
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 8.0e-43 177.2 125 68.8
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 8.0e-43 177.2 125 68.8
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 8.0e-43 177.2 119 71.4
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 1.4e-42 176.4 120 75.0
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 1.4e-42 176.4 119 71.4
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 1.4e-42 176.4 118 74.6
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 2.3e-42 175.6 120 75.0
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 2.3e-42 175.6 122 71.3
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 5.2e-42 174.5 119 71.4
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 5.2e-42 174.5 119 71.4
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 5.2e-42 174.5 125 69.6
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 6.8e-42 174.1 125 68.0
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 1.5e-41 172.9 120 70.8
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 2.0e-41 172.6 117 73.5
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 2.6e-41 172.2 118 73.7
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 2.6e-41 172.2 118 72.0
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 3.4e-41 171.8 124 70.2
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.7e-40 169.5 105 79.0
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 1.7e-40 169.5 117 72.6
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 2.2e-40 169.1 115 71.3
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 2.8e-40 168.7 120 67.5
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 3.7e-40 168.3 117 70.1
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 6.3e-40 167.5 125 63.2
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 8.3e-40 167.2 105 79.0
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 1.6e-38 162.9 105 75.2
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 2.0e-38 162.5 93 82.8
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 2.7e-38 162.2 141 59.6
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 2.7e-38 162.2 127 62.2
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 1.7e-37 159.5 137 62.8
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 2.3e-37 159.1 115 69.6
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.9e-37 158.7 106 74.5
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 6.5e-37 157.5 113 69.0
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 8.6e-37 157.1 139 59.0
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 2.5e-36 155.6 105 70.5
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 4.2e-36 154.8 120 65.8
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 2.1e-35 152.5 105 69.5
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 2.1e-35 152.5 119 68.9
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 3.6e-35 151.8 120 61.7
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 1.0e-34 150.2 113 65.5
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 4.0e-34 148.3 113 65.5
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 2.0e-33 146.0 128 60.9
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 2.8e-32 142.1 120 62.5
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 6.3e-32 141.0 130 60.0
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 1.4e-31 139.8 127 54.3
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 5.4e-31 137.9 118 60.2
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 5.4e-31 137.9 210 41.9
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 7.0e-31 137.5 88 77.3
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 1.3e-29 133.3 118 56.8
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.5e-28 129.8 107 64.5
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 9.5e-28 127.1 101 59.4
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 4.0e-26 121.7 104 60.6
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 3.4e-25 118.6 71 74.6
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 4.4e-25 118.2 81 76.5
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 4.9e-24 114.8 115 57.4
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 6.4e-24 114.4 75 70.7
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 2.4e-23 112.5 128 46.9
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 1.6e-22 109.8 67 71.6
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 7.8e-22 107.5 83 60.2
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.7e-21 106.3 74 75.7
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 6.2e-19 97.8 90 56.7
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 5.2e-18 94.7 172 37.8
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 8.9e-18 94.0 119 39.5
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 2.0e-17 92.8 61 73.8
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 4.9e-16 88.2 70 62.9
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 2.5e-12 75.9 76 48.7
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 3.3e-12 75.5 45 71.1
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 1.8e-10 69.7 131 36.6


User provided reference genes

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