Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G008700 Theobroma cacao HOM05D006484 ORTHO05D008002 1.1e-162 576.6 295 100.0
COL.COLO4_28946 Corchorus olitorius HOM05D006484 ORTHO05D008002 4.4e-132 474.9 295 82.7
Duzib147G0204 Durio zibethinus HOM05D006484 ORTHO05D008002 7.5e-132 474.2 296 83.8
Gohir.A11G067300 Gossypium hirsutum HOM05D006484 ORTHO05D008002 6.8e-125 451.1 299 78.9
Gohir.D11G071200 Gossypium hirsutum HOM05D006484 ORTHO05D008002 6.8e-125 451.1 299 78.9
Gorai.007G076500 Gossypium raimondii HOM05D006484 ORTHO05D008002 6.8e-125 451.1 299 78.9
Manes.17G122200 Manihot esculenta HOM05D006484 ORTHO05D008002 4.1e-114 415.2 281 75.1
CSS0043741 Camellia sinensis var. sinensis HOM05D006484 ORTHO05D008002 5.2e-109 398.3 299 71.2
Dinv33496 Davidia involucrata HOM05D006484 ORTHO05D008002 2.0e-108 396.4 268 74.6
Prupe.3G283800 Prunus persica HOM05D006484 ORTHO05D008002 1.3e-107 393.7 278 70.5
FAN02G1518 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.9e-106 389.8 303 67.0
FvH4_6g50620 Fragaria vesca HOM05D006484 ORTHO05D008002 2.4e-106 389.4 303 67.3
FAN14G3872 Fragaria x ananassa HOM05D006484 ORTHO05D008002 2.4e-106 389.4 303 67.0
RcHm_v2.0_Chr2g0171411 Rosa chinensis HOM05D006484 ORTHO05D008002 2.4e-106 389.4 301 67.4
Haze_14667 Corylus avellana HOM05D006484 ORTHO05D008002 3.2e-106 389.0 295 66.8
TWI56G0797 Tripterygium wilfordii HOM05D006484 ORTHO05D008002 4.1e-106 388.7 284 71.1
Cfa007430 Carpinus fangiana HOM05D006484 ORTHO05D008002 7.0e-106 387.9 272 70.6
CiPaw.03G037700 Carya illinoinensis HOM05D006484 ORTHO05D008002 7.0e-106 387.9 294 66.7
Rhsim08G0055200 Rhododendron simsii HOM05D006484 ORTHO05D008002 4.6e-105 385.2 268 72.4
PGR142G1659 Punica granatum HOM05D006484 ORTHO05D008002 1.0e-104 384.0 298 70.8
arahy.Tifrunner.gnm1.ann1.ND36BV Arachis hypogaea HOM05D006484 ORTHO05D008002 2.3e-104 382.9 299 69.6
arahy.Tifrunner.gnm1.ann1.J6NIZK Arachis hypogaea HOM05D006484 ORTHO05D008002 8.6e-104 380.9 299 69.2
Ciclev10016148m.g Citrus clementina HOM05D006484 ORTHO05D008002 1.5e-103 380.2 276 70.3
FAN09G0334 Fragaria x ananassa HOM05D006484 ORTHO05D008002 1.2e-102 377.1 311 64.6
TAR629G1796 Trochodendron aralioides HOM05D006484 ORTHO05D008002 2.1e-102 376.3 305 65.9
MD17G1035000 Malus domestica HOM05D006484 ORTHO05D008002 8.0e-102 374.4 296 65.5
QL02p076682 Quercus lobata HOM05D006484 ORTHO05D008002 1.4e-101 373.6 291 66.0
MELO3C009955.2 Cucumis melo HOM05D006484 ORTHO05D008002 2.3e-101 372.9 293 66.6
CsaV3_3G042410 Cucumis sativus L. HOM05D006484 ORTHO05D008002 3.1e-101 372.5 293 66.6
GSVIVG01032484001 Vitis vinifera HOM05D006484 ORTHO05D008002 3.1e-101 372.5 231 79.7
FAN05G1767 Fragaria x ananassa HOM05D006484 ORTHO05D008002 4.0e-101 372.1 337 60.2
Potri.017G073000 Populus trichocarpa HOM05D006484 ORTHO05D008002 4.0e-101 372.1 293 66.6
Hma1.2p1_0802F.1_g220370 Hydrangea macrophylla HOM05D006484 ORTHO05D008002 1.2e-100 370.5 273 69.2
CANSAT64G2071 Cannabis sativa HOM05D006484 ORTHO05D008002 1.5e-100 370.2 269 71.4
ClCG10G014230 Citrullus lanatus HOM05D006484 ORTHO05D008002 3.4e-100 369.0 293 65.5
THA.LOC104805398 Tarenaya hassleriana HOM05D006484 ORTHO05D008002 3.4e-100 369.0 282 68.4
Eucgr.I01814 Eucalyptus grandis HOM05D006484 ORTHO05D008002 7.5e-100 367.9 271 71.6
Sabra16G0230700 Salix brachista HOM05D006484 ORTHO05D008002 9.8e-100 367.5 288 66.7
Aqoxy3G01007 Aquilegia oxysepala HOM05D006484 ORTHO05D008002 8.3e-99 364.4 267 69.7
Sed0007993 Sechium edule HOM05D006484 ORTHO05D008002 2.4e-98 362.8 288 66.3
Hund05806 Selenicereus undatus HOM05D006484 ORTHO05D008002 2.4e-98 362.8 232 78.4
MSTRG.15510 Avicennia marina HOM05D006484 ORTHO05D008002 1.2e-97 360.5 271 67.2
MBI16_g26453_MAGBIO Magnolia biondii HOM05D006484 ORTHO05D008002 1.2e-97 360.5 288 65.3
SalBow7G4444 Salvia bowleyana HOM05D006484 ORTHO05D008002 2.1e-97 359.8 277 65.3
VMungo0464G2075 Vigna mungo HOM05D006484 ORTHO05D008002 2.1e-97 359.8 283 65.4
Lsat_1_v5_gn_0_26201 Lactuca sativa HOM05D006484 ORTHO05D008002 2.7e-97 359.4 288 65.3
Nitab4.5_0003337g0080 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.0e-96 357.5 286 66.4
Nitab4.5_0005176g0030 Nicotiana tabacum HOM05D006484 ORTHO05D008002 1.3e-96 357.1 285 66.3
Solyc02g086890.3 Solanum lycopersicum HOM05D006484 ORTHO05D008002 3.9e-96 355.5 292 65.1
Cc07_g02300 Coffea canephora HOM05D006484 ORTHO05D008002 5.1e-96 355.1 230 76.5
Sopen02g031660 Solanum pennellii HOM05D006484 ORTHO05D008002 8.6e-96 354.4 292 65.1
Peaxi162Scf00129g00106 Petunia axillaris HOM05D006484 ORTHO05D008002 2.5e-95 352.8 275 66.5
BcaC02g09737 Brassica carinata HOM05D006484 ORTHO05D008002 3.3e-95 352.4 276 66.3
C04p37040 Brassica napus HOM05D006484 ORTHO05D008002 3.3e-95 352.4 276 66.3
BolC4t25282H Brassica oleracea HOM05D006484 ORTHO05D008002 3.3e-95 352.4 276 66.3
A04p04700 Brassica napus HOM05D006484 ORTHO05D008002 4.3e-95 352.1 272 66.5
BraA04t16182Z Brassica rapa HOM05D006484 ORTHO05D008002 4.3e-95 352.1 272 66.5
HanXRQChr15g0474541 Helianthus annuus HOM05D006484 ORTHO05D008002 9.5e-95 350.9 290 63.4
Phvul.004G016700 Phaseolus vulgaris HOM05D006484 ORTHO05D008002 1.2e-94 350.5 236 72.9
Sp5g07210 Schrenkiella parvula HOM05D006484 ORTHO05D008002 1.2e-94 350.5 281 65.8
SGA_v2.0_scaffold30G12470 Striga asiatica HOM05D006484 ORTHO05D008002 1.6e-94 350.1 230 73.5
ECA246G1918 Erigeron canadensis HOM05D006484 ORTHO05D008002 2.8e-94 349.4 235 71.9
Glyma.19G009200 Glycine max HOM05D006484 ORTHO05D008002 2.8e-94 349.4 236 71.2
Lalb_Chr21g0319431 Lupinus albus HOM05D006484 ORTHO05D008002 2.8e-94 349.4 236 73.3
Migut.K01368 Erythranthe guttata HOM05D006484 ORTHO05D008002 3.6e-94 349.0 286 62.6
Lj7A591T78 Lonicera japonica HOM05D006484 ORTHO05D008002 3.6e-94 349.0 245 71.8
AL5G36370 Arabidopsis lyrata HOM05D006484 ORTHO05D008002 8.1e-94 347.8 278 65.1
Glyma.13G169000 Glycine max HOM05D006484 ORTHO05D008002 8.1e-94 347.8 288 62.2
TPR.G2295 Trifolium pratense HOM05D006484 ORTHO05D008002 1.1e-93 347.4 292 63.7
A09p48180 Brassica napus HOM05D006484 ORTHO05D008002 1.4e-93 347.1 276 64.9
BcaB02g08436 Brassica carinata HOM05D006484 ORTHO05D008002 2.3e-93 346.3 280 63.9
BcaC07g39842 Brassica carinata HOM05D006484 ORTHO05D008002 2.3e-93 346.3 275 64.7
C08p30440 Brassica napus HOM05D006484 ORTHO05D008002 2.3e-93 346.3 275 64.7
BraA09t40274Z Brassica rapa HOM05D006484 ORTHO05D008002 2.3e-93 346.3 276 64.5
AT3G55250 Arabidopsis thaliana HOM05D006484 ORTHO05D008002 3.1e-93 345.9 275 65.5
CARHR165250 Cardamine hirsuta HOM05D006484 ORTHO05D008002 5.2e-93 345.1 275 64.7
unitig_88.g27777 Utricularia gibba HOM05D000190 ORTHO05D000113 6.8e-93 344.7 243 69.1
BolC8t50667H Brassica oleracea HOM05D006484 ORTHO05D008002 1.5e-92 343.6 275 64.0
PSO063G6163 Papaver somniferum HOM05D006484 ORTHO05D008002 4.4e-92 342.0 283 62.2
PSO832G1464 Papaver somniferum HOM05D006484 ORTHO05D008002 7.5e-92 341.3 283 62.5
Ca_04198_v3 Cicer arietinum L. HOM05D006484 ORTHO05D008002 4.9e-91 338.6 237 71.7
Thhalv10010599m.g Eutrema salsugineum HOM05D006484 ORTHO05D008002 6.4e-91 338.2 279 62.4
Ah.02g127510 Amaranthus hybridus HOM05D006484 ORTHO05D008002 1.1e-90 337.4 227 74.4
Aa31LG10G9850 Aethionema arabicum HOM05D006484 ORTHO05D008002 1.4e-90 337.0 285 61.8
EL10Ac6g14629 Beta vulgaris HOM05D006484 ORTHO05D008002 1.9e-90 336.7 282 63.8
Carub.0005s2191 Capsella rubella HOM05D006484 ORTHO05D008002 1.6e-89 333.6 277 62.8
PGSC0003DMG401000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 4.6e-89 332.0 226 73.0
PGSC0003DMG402000526 Solanum tuberosum HOM05D006484 ORTHO05D008002 4.6e-89 332.0 226 73.0
DCAR_021681 Daucus carota HOM05D006484 ORTHO05D008002 3.9e-88 328.9 306 56.9
Medtr6g007180 Medicago truncatula HOM05D006484 ORTHO05D008002 3.9e-88 328.9 290 61.7
Psat1g058640 Pisum sativum HOM05D006484 ORTHO05D008002 1.1e-87 327.4 230 70.0
Lj2g0018435 Lotus japonicus HOM05D006484 ORTHO05D008002 2.5e-87 326.2 289 59.9
Sc10g0003790 Simmondsia chinensis HOM05D006484 ORTHO05D008002 8.1e-86 321.2 237 69.2
CDE05G1394 Ceratophyllum demersum HOM05D001719 ORTHO05D008883 4.4e-84 315.5 222 68.0
Nn4g22800 Nelumbo nucifera HOM05D006484 ORTHO05D008002 1.7e-83 313.5 278 60.4
ATR0730G086 Amborella trichopoda HOM05D006484 ORTHO05D008002 7.8e-81 304.7 230 65.2
Os05g0526200 Oryza sativa ssp. japonica HOM05D006484 ORTHO05D008002 3.3e-79 299.3 251 62.5
BcaB01g00117 Brassica carinata HOM05D006484 ORTHO05D008002 3.9e-72 275.8 267 56.6
Actinidia35740 Actinidia chinensis HOM05D006484 ORTHO05D008002 1.1e-71 274.2 215 65.6
HPP92_024318 Vanilla planifolia HOM05D006484 ORTHO05D008002 2.8e-70 269.6 239 58.6
vmacro18241 Vaccinium macrocarpon HOM05D006484 ORTHO05D008002 8.4e-67 258.1 264 52.7
Cpa.g.sc39.92 Carica papaya HOM05D006484 ORTHO05D008002 3.0e-64 249.6 172 72.7
AUR62007841 Chenopodium quinoa HOM05D006484 ORTHO05D008002 9.6e-63 244.6 260 52.7
AagrBONN_evm.TU.Sc2ySwM_344.2636 Anthoceros agrestis HOM05D006484 ORTHO05D008002 6.1e-49 198.7 209 47.8
Zm00001eb215070 Zea mays HOM05D006484 ORTHO05D008002 3.0e-48 196.4 134 69.4
BolC3t16636H Brassica oleracea HOM05D006484 ORTHO05D008002 6.7e-48 195.3 174 58.6
AUR62003035 Chenopodium quinoa HOM05D006484 ORTHO05D008002 1.9e-47 193.7 202 53.5
Pp3c21_1380 Physcomitrium patens HOM05D006484 ORTHO05D008002 1.8e-45 187.2 193 48.7
BolC7t43763H Brassica oleracea HOM05D006484 ORTHO05D008002 2.4e-45 186.8 198 53.0
Mapoly0095s0016 Marchantia polymorpha HOM05D006484 ORTHO05D008002 2.4e-45 186.8 193 48.7
SMO165G0092 Selaginella moellendorffii HOM05D006484 ORTHO05D008002 2.5e-42 176.8 216 44.9
CBR_g163 Chara braunii HOM05D006484 ORTHO05D008002 1.2e-36 157.9 192 41.7
HPP92_024280 Vanilla planifolia HOM05D006484 ORTHO05D008002 5.9e-36 155.6 144 54.9
Atru.chr6.2293 Acer truncatum HOM05D006484 ORTHO05D008002 1.6e-33 147.5 87 78.2
CAN.G473.120 Capsicum annuum HOM05D006484 ORTHO05D008002 1.0e-32 144.8 127 60.6
Atru.chr6.2294 Acer truncatum HOM05D006484 ORTHO05D008002 5.0e-27 125.9 87 70.1
CAN.G685.18 Capsicum annuum HOM05D006484 ORTHO05D008002 5.0e-27 125.9 91 71.4
MD09G1034600 Malus domestica HOM05D006484 ORTHO05D000001 2.3e-24 117.1 91 63.7
BcaC06g34142 Brassica carinata HOM05D006484 ORTHO05D008002 1.1e-21 108.2 140 47.1
arahy.Tifrunner.gnm1.ann1.QWBN9A Arachis hypogaea HOM05D006484 ORTHO05D008002 2.7e-17 93.6 60 73.3
Cre03.g183400 Chlamydomonas reinhardtii HOM05D006484 ORTHO05D008002 4.4e-15 86.3 219 26.5
TPR.G33278 Trifolium pratense HOM05D006484 ORTHO05D008002 2.0e-12 77.4 52 67.3
MD09G1034700 Malus domestica HOM05D006484 ORTHO05D008002 1.0e-11 75.1 84 52.4
arahy.Tifrunner.gnm1.ann1.5V94PQ Arachis hypogaea HOM05D005791 ORTHO05D008002 4.4e-07 59.7 34 82.4
VMungo0464G0201 Vigna mungo HOM05D000051 ORTHO05D000015 2.8e-06 57.0 45 64.4
MCO09G217 Micromonas commoda HOM05D006484 ORTHO05D008002 3.7e-06 56.6 172 27.9


User provided reference genes

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