Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.8e-89 332.8 199 100.0
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 6.9e-73 277.7 199 81.4
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.5e-72 276.6 199 80.9
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.8e-65 253.1 196 79.6
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 7.2e-46 188.0 157 73.9
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.6e-40 170.2 99 89.9
Gorai.009G308300 Gossypium raimondii HOM05D001962 ORTHO05D019237 1.7e-39 166.8 181 59.7
Gorai.N013200 Gossypium raimondii HOM05D001962 ORTHO05D019237 5.0e-39 165.2 187 59.4
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 3.2e-38 162.5 204 57.4
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 4.2e-38 162.2 203 51.7
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 5.5e-38 161.8 200 51.5
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.1e-37 159.8 158 65.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.7e-37 159.5 201 50.7
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 6.1e-37 158.3 203 58.6
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.3e-36 156.4 203 50.7
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 3.0e-36 156.0 203 58.1
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 4.4e-35 152.1 204 50.5
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 5.7e-35 151.8 200 51.5
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 2.8e-34 149.4 200 47.5
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 3.7e-34 149.1 202 49.5
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.8e-34 148.7 96 79.2
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 4.8e-34 148.7 196 49.5
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 6.3e-34 148.3 99 75.8
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 6.3e-34 148.3 166 52.4
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 8.3e-34 147.9 204 51.5
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 8.3e-34 147.9 99 75.8
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.4e-33 147.1 201 47.8
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.4e-33 147.1 205 52.2
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.8e-33 146.7 200 49.0
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.1e-33 146.0 96 77.1
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 4.1e-33 145.6 95 77.9
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 4.1e-33 145.6 191 53.4
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 5.4e-33 145.2 95 76.8
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 5.4e-33 145.2 139 68.3
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 5.4e-33 145.2 167 67.7
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 5.4e-33 145.2 165 52.7
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.4e-33 145.2 165 52.7
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 5.4e-33 145.2 197 47.7
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 5.4e-33 145.2 200 48.0
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.4e-33 145.2 200 50.5
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 7.0e-33 144.8 203 48.8
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 9.1e-33 144.4 97 76.3
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 9.1e-33 144.4 139 74.1
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 9.1e-33 144.4 199 46.7
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.1e-33 144.4 190 48.9
Gohir.A08G189616 Gossypium hirsutum HOM05D001962 ORTHO05D019237 9.1e-33 144.4 191 53.4
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.2e-32 144.1 201 51.7
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.6e-32 143.7 94 77.7
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.6e-32 143.7 195 46.7
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.6e-32 143.7 96 75.0
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.6e-32 143.7 188 47.9
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 2.0e-32 143.3 96 76.0
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 2.0e-32 143.3 96 76.0
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 2.0e-32 143.3 96 76.0
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.0e-32 143.3 93 78.5
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 2.0e-32 143.3 175 52.6
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 3.5e-32 142.5 132 73.5
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.5e-32 142.5 207 46.9
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 4.5e-32 142.1 94 76.6
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 4.5e-32 142.1 96 75.0
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 5.9e-32 141.7 194 45.4
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 7.7e-32 141.4 199 58.3
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.7e-32 141.4 203 47.3
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.0e-31 141.0 96 74.0
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.0e-31 141.0 201 48.8
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.3e-31 140.6 166 50.6
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.3e-31 140.6 199 46.2
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.7e-31 140.2 141 55.3
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.7e-31 140.2 96 75.0
Gohir.D05G270500 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.7e-31 140.2 118 73.7
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.7e-31 140.2 201 44.3
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.7e-31 140.2 201 47.3
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.7e-31 140.2 206 47.1
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.2e-31 139.8 126 70.6
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.2e-31 139.8 131 65.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 2.2e-31 139.8 147 55.8
Gohir.D08G146675 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.9e-31 139.4 118 73.7
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 3.8e-31 139.0 97 73.2
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 6.5e-31 138.3 167 52.1
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 6.5e-31 138.3 201 46.8
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.1e-30 137.5 93 74.2
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 3.2e-30 136.0 91 76.9
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 3.2e-30 136.0 91 76.9
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 3.2e-30 136.0 95 73.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.2e-30 136.0 200 53.5
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 3.2e-30 136.0 145 53.8
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 4.2e-30 135.6 139 55.4
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 4.2e-30 135.6 93 72.0
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 4.2e-30 135.6 93 71.0
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 5.5e-30 135.2 202 47.5
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 5.5e-30 135.2 92 75.0
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 5.5e-30 135.2 91 75.8
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 1.6e-29 133.7 92 72.8
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.8e-29 132.9 92 72.8
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 3.6e-29 132.5 96 67.7
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.0e-28 131.0 203 46.3
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.0e-28 131.0 122 62.3
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 2.3e-28 129.8 94 70.2
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.3e-28 129.8 93 68.8
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 4.0e-28 129.0 94 68.1
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 5.2e-28 128.6 95 70.5
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 6.8e-28 128.3 199 44.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 6.8e-28 128.3 94 70.2
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 8.8e-28 127.9 92 71.7
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 8.8e-28 127.9 196 48.0
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.5e-27 127.1 196 43.9
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.5e-27 127.1 196 43.4
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.5e-27 127.1 92 68.5
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 1.5e-27 127.1 181 53.6
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.5e-27 127.1 165 53.9
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.5e-27 127.1 82 79.3
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 3.4e-27 125.9 98 68.4
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 9.8e-27 124.4 216 43.1
Gohir.D10G193850 Gossypium hirsutum HOM05D005889 ORTHO05D007495 4.9e-26 122.1 76 81.6
Gohir.D11G251951 Gossypium hirsutum HOM05D005889 ORTHO05D047070 4.1e-25 119.0 76 78.9
Gorai.007G270400 Gossypium raimondii HOM05D005889 ORTHO05D047070 4.1e-25 119.0 76 78.9
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.2e-24 117.5 82 74.4
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.2e-24 117.5 78 75.6
Gohir.D08G117450 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.0e-24 116.7 76 78.9
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.0e-24 116.7 91 64.8
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 7.8e-24 114.8 92 62.0
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 2.3e-23 113.2 77 72.7
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.1e-22 110.9 86 64.0
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 3.6e-21 105.9 84 60.7
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 4.7e-21 105.5 73 72.6
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 4.7e-21 105.5 95 58.9
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.4e-20 104.0 86 61.6
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.8e-20 103.6 72 73.6
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 3.0e-20 102.8 78 65.4
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 8.3e-18 94.7 69 75.4
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 2.7e-16 89.7 122 45.1
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 4.6e-16 89.0 121 46.3
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 4.6e-16 89.0 121 46.3
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 6.6e-15 85.1 180 38.9
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 7.3e-14 81.6 63 73.0
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.8e-13 79.7 57 77.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 3.6e-13 79.3 85 42.4
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 4.0e-12 75.9 86 50.0
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 3.7e-10 69.3 141 39.7
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 8.3e-10 68.2 42 78.6
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 9.2e-09 64.7 85 37.6
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 1.2e-08 64.3 56 55.4
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 5.0e-07 58.9 138 31.9
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 5.0e-07 58.9 69 49.3
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 6.6e-07 58.5 52 50.0


User provided reference genes

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