Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 3.7e-100 368.2 188 100.0
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 4.7e-79 298.1 182 83.0
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 4.7e-79 298.1 182 83.0
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 4.0e-78 295.0 182 81.9
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 1.8e-75 286.2 161 89.4
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 4.7e-71 271.6 186 72.6
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 4.7e-71 271.6 186 72.6
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.5e-69 266.5 180 75.6
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 3.4e-69 265.4 178 75.8
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 1.3e-68 263.5 184 70.7
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 1.7e-68 263.1 178 75.3
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 2.8e-68 262.3 172 75.0
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 3.7e-68 261.9 184 72.8
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 6.3e-68 261.2 186 71.5
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 6.3e-68 261.2 181 71.8
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 3.1e-67 258.8 182 73.6
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 4.1e-67 258.5 174 72.4
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 7.0e-67 257.7 178 71.9
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 2.0e-66 256.1 186 69.4
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 4.5e-66 255.0 181 71.8
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 7.7e-66 254.2 186 68.3
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 7.7e-66 254.2 186 67.7
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-65 253.4 186 68.3
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 1.3e-65 253.4 173 74.0
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.7e-65 253.1 176 72.2
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 1.7e-65 253.1 181 74.0
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.7e-65 253.1 180 71.1
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 3.8e-65 251.9 186 67.2
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.0e-65 251.5 186 67.7
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.6e-65 250.8 186 67.7
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 3.2e-64 248.8 192 65.1
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 4.2e-64 248.4 180 69.4
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 5.5e-64 248.1 181 69.6
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 1.2e-63 246.9 181 67.4
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 6.1e-63 244.6 180 68.3
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 6.1e-63 244.6 181 66.3
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 3.0e-62 242.3 185 65.9
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 3.0e-62 242.3 181 66.3
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 2.6e-61 239.2 181 66.3
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 3.7e-60 235.3 180 65.6
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 4.9e-60 235.0 181 66.3
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 4.9e-60 235.0 175 69.1
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 6.3e-60 234.6 171 69.0
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 1.8e-59 233.0 179 64.8
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 3.1e-59 232.3 158 72.8
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 4.1e-59 231.9 171 69.0
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 7.0e-59 231.1 177 65.5
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 7.0e-59 231.1 174 66.1
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.6e-58 229.9 177 66.1
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 2.0e-58 229.6 181 63.0
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 2.0e-58 229.6 181 63.0
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 2.0e-58 229.6 180 66.1
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 4.5e-58 228.4 181 62.4
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 5.9e-58 228.0 177 65.0
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 7.8e-58 227.6 177 66.1
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 7.8e-58 227.6 177 66.1
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 1.0e-57 227.3 171 66.7
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 2.3e-57 226.1 175 64.6
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 2.3e-57 226.1 177 65.0
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 2.3e-57 226.1 177 63.3
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.9e-57 225.7 171 66.1
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 8.6e-57 224.2 172 65.7
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 1.1e-56 223.8 175 63.4
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 3.3e-56 222.2 177 63.8
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 5.6e-56 221.5 170 64.7
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 9.5e-56 220.7 167 65.9
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 2.1e-55 219.5 173 64.2
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 2.8e-55 219.2 133 82.7
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 3.6e-55 218.8 170 65.9
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 1.4e-54 216.9 169 63.9
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 2.3e-54 216.1 179 60.9
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 5.2e-54 214.9 179 60.3
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 8.9e-54 214.2 157 68.8
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 1.2e-53 213.8 170 63.5
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.5e-53 213.4 187 58.3
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 3.4e-53 212.2 174 62.1
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 4.4e-53 211.8 166 66.3
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 5.7e-53 211.5 185 57.3
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 1.3e-52 210.3 186 59.7
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 2.9e-52 209.1 154 66.2
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 1.4e-51 206.8 158 66.5
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 2.4e-51 206.1 156 66.0
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 3.2e-51 205.7 178 56.2
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 4.1e-51 205.3 171 58.5
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 4.6e-50 201.8 159 62.9
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 5.0e-49 198.4 141 69.5
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 1.2e-47 193.7 170 57.6
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 5.2e-46 188.3 192 55.2
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 2.0e-45 186.4 192 54.2
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 2.6e-45 186.0 138 66.7
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 7.0e-43 177.9 140 65.0
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 2.3e-41 172.9 181 50.8
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 5.6e-40 168.3 193 48.2
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 5.6e-40 168.3 131 64.9
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 7.3e-40 167.9 130 65.4
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 1.1e-38 164.1 180 47.8
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 6.8e-38 161.4 129 62.8
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 9.9e-37 157.5 199 44.7
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 9.9e-37 157.5 130 60.0
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 2.2e-36 156.4 132 58.3
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 8.6e-33 144.4 98 71.4
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.9e-32 143.3 169 46.7
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 3.6e-31 139.0 103 68.0
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 2.4e-27 126.3 139 48.2
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 8.1e-23 111.3 171 38.6
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 8.1e-23 111.3 152 45.4
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 5.2e-22 108.6 178 38.2
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 1.1e-19 100.9 107 49.5
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 3.2e-19 99.4 147 43.5
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 3.0e-17 92.8 156 37.2
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 6.6e-17 91.7 132 41.7
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 1.3e-15 87.4 151 37.7
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 4.5e-13 79.0 48 72.9
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 4.9e-12 75.5 169 31.4
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 3.7e-07 59.3 43 58.1


User provided reference genes

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