Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G000700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-93 346.3 176 100.0
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 6.6e-27 124.8 131 43.5
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 8.7e-27 124.4 131 41.2
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-26 123.2 131 45.8
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 9.0e-24 114.4 131 41.2
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 5.8e-23 111.7 128 42.2
Thecc.K0005100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.2e-22 109.8 137 40.1
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 2.9e-22 109.4 134 41.8
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.9e-22 108.6 130 40.0
Thecc.04G117300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-21 107.1 125 40.0
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.6e-20 103.6 144 40.3
Thecc.07G153900 Theobroma cacao HOM05D000003 ORTHO05D002259 7.8e-20 101.3 124 44.4
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.3e-19 99.8 131 39.7
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 5.1e-19 98.6 122 41.8
Thecc.05G092100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.8e-17 92.8 97 40.2
Thecc.01G196800 Theobroma cacao HOM05D000003 ORTHO05D002259 8.1e-17 91.3 130 33.8
Thecc.08G107500 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-16 90.5 153 32.7
Atru.chr13.1770 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-16 90.1 127 38.6
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 2.4e-16 89.7 127 36.2
Duzib264G0111 Durio zibethinus HOM05D000003 ORTHO05D002259 4.0e-16 89.0 128 35.2
Thecc.04G054400 Theobroma cacao HOM05D000003 ORTHO05D002259 6.9e-16 88.2 141 35.5
Thecc.05G076400 Theobroma cacao HOM05D000003 ORTHO05D002259 6.9e-16 88.2 131 32.8
Thecc.05G198700 Theobroma cacao HOM05D000003 ORTHO05D002259 9.0e-16 87.8 98 45.9
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-15 85.1 137 39.4
Atru.chr6.253 Acer truncatum HOM05D000003 ORTHO05D002259 7.6e-15 84.7 134 35.8
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-14 82.8 127 37.0
Thecc.02G094300 Theobroma cacao HOM05D000003 ORTHO05D002259 2.9e-14 82.8 97 41.2
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-14 82.4 135 34.1
Hma1.2p1_0719F.1_g208490 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 6.4e-14 81.6 128 35.9
Thecc.07G150400 Theobroma cacao HOM05D000003 ORTHO05D002259 6.4e-14 81.6 90 52.2
Thecc.02G247200 Theobroma cacao HOM05D000003 ORTHO05D002259 8.4e-14 81.3 103 35.0
Thecc.10G164000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-13 80.9 159 36.5
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-13 80.5 140 33.6
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 1.9e-13 80.1 122 36.1
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 2.4e-13 79.7 136 35.3
Thecc.05G094900 Theobroma cacao HOM05D000003 ORTHO05D002259 2.4e-13 79.7 119 37.0
Gorai.001G032500 Gossypium raimondii HOM05D014430 ORTHO05D002259 5.4e-13 78.6 127 34.6
Hma1.2p1_3886F.1_g337920 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.4e-13 78.6 129 34.9
Gohir.D07G031150 Gossypium hirsutum HOM05D014430 ORTHO05D002259 9.3e-13 77.8 127 34.6
Atru.chr3.3914 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-12 77.4 142 35.9
Atru.chr5.3360 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-12 77.4 124 33.9
COL.COLO4_32709 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.2e-12 77.4 100 41.0
Thecc.05G210800 Theobroma cacao HOM05D014430 ORTHO05D002259 1.6e-12 77.0 106 34.9
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 2.1e-12 76.6 126 34.9
Thecc.04G262700 Theobroma cacao HOM05D000003 ORTHO05D002259 2.1e-12 76.6 134 33.6
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-12 76.3 139 35.3
Thecc.02G058700 Theobroma cacao HOM05D000003 ORTHO05D002259 3.5e-12 75.9 103 35.9
Atru.chr5.2972 Acer truncatum HOM05D000003 ORTHO05D002259 4.6e-12 75.5 128 34.4
Thecc.07G137100 Theobroma cacao HOM05D000003 ORTHO05D002259 6.0e-12 75.1 93 37.6
Atru.chr1.2519 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-11 73.9 125 32.8
Atru.chr7.96 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-11 73.9 122 33.6
Atru.chr12.2402 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-11 73.6 128 37.5
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.8e-11 73.6 135 30.4
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.8e-11 73.6 117 35.9
Atru.chr2.2465 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-11 73.2 120 33.3
Atru.chr6.103 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-11 73.2 135 34.1
Atru.chr8.1166 Acer truncatum HOM05D003047 ORTHO05D000627 2.3e-11 73.2 128 35.2
Atru.chr2.3564 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-11 72.8 138 31.9
Atru.chr6.1197 Acer truncatum HOM05D000003 ORTHO05D002259 3.0e-11 72.8 135 31.9
Thecc.06G027200 Theobroma cacao HOM05D000003 ORTHO05D002259 3.0e-11 72.8 115 39.1
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.0e-11 72.8 132 35.6
Atru.chr1.3979 Acer truncatum HOM05D000003 ORTHO05D002259 5.1e-11 72.0 103 34.0
Atru.chr11.2510 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-11 72.0 135 31.9
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-11 72.0 126 36.5
Atru.chr10.950 Acer truncatum HOM05D000003 ORTHO05D002259 6.7e-11 71.6 136 30.9
Atru.chr6.1326 Acer truncatum HOM05D000003 ORTHO05D002259 6.7e-11 71.6 120 33.3
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 6.7e-11 71.6 64 53.1
Thecc.04G121700 Theobroma cacao HOM05D000003 ORTHO05D002259 6.7e-11 71.6 131 32.1
Atru.chr9.316 Acer truncatum HOM05D000003 ORTHO05D002259 8.7e-11 71.2 126 33.3
Thecc.10G061600 Theobroma cacao HOM05D000003 ORTHO05D002259 8.7e-11 71.2 143 30.1
Atru.chr6.296 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-10 70.9 127 33.1
COL.COLO4_22852 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.1e-10 70.9 94 34.0
Gorai.010G220900 Gossypium raimondii HOM05D014430 ORTHO05D002259 1.1e-10 70.9 128 31.2
Hma1.2p1_1754F.1_g300945 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.5e-10 70.5 138 30.4
Gohir.D06G188501 Gossypium hirsutum HOM05D014430 ORTHO05D002259 2.5e-10 69.7 128 30.5
Thecc.06G139900 Theobroma cacao HOM05D000003 ORTHO05D002259 5.6e-10 68.6 125 34.4
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.6e-10 68.6 141 32.6
Thecc.04G086900 Theobroma cacao HOM05D000508 ORTHO05D000371 7.4e-10 68.2 94 35.1
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 9.6e-10 67.8 126 36.5
Atru.chr4.1523 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-09 67.4 134 35.8
Atru.chr11.1841 Acer truncatum HOM05D000003 ORTHO05D002259 1.6e-09 67.0 98 33.7
Atru.chr7.765 Acer truncatum HOM05D000003 ORTHO05D002259 2.1e-09 66.6 104 35.6
Atru.chr4.3157 Acer truncatum HOM05D000003 ORTHO05D002259 3.7e-09 65.9 126 30.2
COL.COLO4_17106 Corchorus olitorius HOM05D000003 ORTHO05D002259 4.8e-09 65.5 61 44.3
Gohir.A06G181801 Gossypium hirsutum HOM05D014430 ORTHO05D002259 4.8e-09 65.5 123 30.9
COL.COLO4_22651 Corchorus olitorius HOM05D000003 ORTHO05D002259 6.2e-09 65.1 56 53.6
Thecc.05G155300 Theobroma cacao HOM05D014430 ORTHO05D002259 6.2e-09 65.1 137 28.5
Atru.chr2.2563 Acer truncatum HOM05D000003 ORTHO05D002259 8.1e-09 64.7 136 32.4
Thecc.06G134300 Theobroma cacao HOM05D014430 ORTHO05D002259 8.1e-09 64.7 71 40.8
Atru.chr1.3836 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-08 64.3 124 32.3
Atru.chr12.2307 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-08 64.3 137 33.6
COL.COLO4_33496 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.1e-08 64.3 67 41.8
Hma1.2p1_0897F.1_g234290 Hydrangea macrophylla HOM05D000155 ORTHO05D000022 1.1e-08 64.3 106 34.0
Atru.chr2.1449 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-08 63.9 90 35.6
Atru.chr13.2301 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-08 63.5 134 29.9
Thecc.09G250800 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-08 63.5 70 42.9
Atru.chr11.1160 Acer truncatum HOM05D000003 ORTHO05D002259 2.4e-08 63.2 137 35.0
Atru.chr2.2918 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-08 63.2 122 33.6
Hma1.2p1_1241F.1_g269710 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.4e-08 63.2 82 40.2
Thecc.09G083400 Theobroma cacao HOM05D014430 ORTHO05D002259 2.4e-08 63.2 131 26.0
Hma1.2p1_0402F.1_g145030 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.1e-08 62.8 112 29.5
Thecc.06G038000 Theobroma cacao HOM05D066557 ORTHO05D002259 4.0e-08 62.4 67 44.8
COL.COLO4_33988 Corchorus olitorius HOM05D012135 ORTHO05D016957 6.9e-08 61.6 97 32.0
Thecc.04G251800 Theobroma cacao HOM05D000003 ORTHO05D002259 9.0e-08 61.2 74 41.9
Hma1.2p1_0024F.1_g016160 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.2e-07 60.8 70 44.3
Thecc.09G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 2.0e-07 60.1 130 29.2
Thecc.02G166000 Theobroma cacao HOM05D000003 ORTHO05D002259 2.6e-07 59.7 70 42.9
Thecc.05G083000 Theobroma cacao HOM05D000003 ORTHO05D002259 2.6e-07 59.7 86 39.5
Atru.chr10.984 Acer truncatum HOM05D000502 ORTHO05D002259 3.4e-07 59.3 73 45.2
Hma1.2p1_1132F.1_g260220 Hydrangea macrophylla HOM05D000155 ORTHO05D000022 5.8e-07 58.5 60 46.7
Thecc.06G027000 Theobroma cacao HOM05D000003 ORTHO05D002259 9.9e-07 57.8 63 46.0
Thecc.08G170700 Theobroma cacao HOM05D000003 ORTHO05D002259 9.9e-07 57.8 50 46.0
Atru.chr13.1833 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-06 57.4 135 30.4
COL.COLO4_05921 Corchorus olitorius HOM05D008457 ORTHO05D029079 1.3e-06 57.4 59 44.1
Gohir.A07G027150 Gossypium hirsutum HOM05D014430 ORTHO05D002259 1.3e-06 57.4 46 47.8
Thecc.06G100900 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-06 57.4 83 38.6
Thecc.03G016300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-06 57.0 52 53.8
Atru.chr2.1988 Acer truncatum HOM05D000003 ORTHO05D002259 2.2e-06 56.6 114 28.9
MBI16_g37125_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.2e-06 56.6 153 30.7
Thecc.04G004700 Theobroma cacao HOM05D000003 ORTHO05D002259 2.2e-06 56.6 71 45.1
Atru.chr3.2345 Acer truncatum HOM05D000003 ORTHO05D002259 2.9e-06 56.2 107 33.6
COL.COLO4_20696 Corchorus olitorius HOM05D000003 ORTHO05D002259 2.9e-06 56.2 63 46.0
Atru.chr13.1845 Acer truncatum HOM05D000003 ORTHO05D002259 4.9e-06 55.5 68 44.1
Atru.chr7.675 Acer truncatum HOM05D000003 ORTHO05D002259 4.9e-06 55.5 109 34.9
Hma1.2p1_0585F.1_g183600 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.9e-06 55.5 51 51.0
Thecc.07G154300 Theobroma cacao HOM05D000003 ORTHO05D002259 4.9e-06 55.5 82 30.5
Thecc.09G211800 Theobroma cacao HOM05D009258 ORTHO05D009583 4.9e-06 55.5 60 40.0
Atru.chr3.2588 Acer truncatum HOM05D000003 ORTHO05D000022 6.4e-06 55.1 100 33.0
Thecc.06G026400 Theobroma cacao HOM05D000003 ORTHO05D002259 6.4e-06 55.1 60 43.3


User provided reference genes

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