Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 2.4e-66 255.8 172 100.0
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.6e-57 224.9 171 91.8
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 8.7e-56 220.7 171 91.2
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 8.7e-56 220.7 171 91.2
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.9e-55 219.5 170 77.1
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 5.6e-55 218.0 170 78.8
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 6.9e-53 211.1 176 88.1
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 4.9e-51 204.9 176 84.7
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 6.4e-51 204.5 164 75.0
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.9e-50 203.0 176 73.9
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 9.3e-50 200.7 172 84.9
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.7e-49 199.1 164 70.7
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.7e-49 199.1 164 70.7
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.7e-49 199.1 164 70.7
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 2.7e-49 199.1 173 83.2
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 7.9e-49 197.6 177 72.9
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 7.9e-49 197.6 174 71.8
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 2.3e-48 196.1 172 72.1
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.3e-48 196.1 176 59.7
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.0e-48 195.7 173 68.8
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.0e-48 195.7 173 70.5
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.1e-47 193.7 164 82.3
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.5e-47 193.4 173 84.4
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.9e-47 193.0 173 83.8
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.5e-47 192.6 164 82.9
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 3.3e-47 192.2 174 69.5
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 9.6e-47 190.7 164 72.0
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.6e-46 189.9 167 68.9
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.1e-46 189.5 163 73.0
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 2.1e-46 189.5 172 69.8
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 8.1e-46 187.6 172 71.5
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 8.1e-46 187.6 171 81.3
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.1e-45 187.2 172 79.7
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.8e-45 186.4 178 80.3
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.4e-45 186.0 170 65.9
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 2.4e-45 186.0 164 83.5
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 4.0e-45 185.3 166 72.9
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.3e-45 184.9 172 68.0
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 6.9e-45 184.5 172 80.8
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.5e-44 183.3 170 65.3
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.0e-44 183.0 164 67.1
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.6e-44 182.6 170 68.8
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 2.6e-44 182.6 163 71.8
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.6e-44 182.6 171 81.9
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 3.4e-44 182.2 170 71.8
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 3.4e-44 182.2 155 83.2
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 9.9e-44 180.6 174 81.0
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 9.9e-44 180.6 174 81.0
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.3e-43 180.3 170 82.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.2e-43 179.5 161 81.4
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 2.9e-43 179.1 173 77.5
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 4.9e-43 178.3 172 79.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 8.4e-43 177.6 166 68.1
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.4e-42 176.8 176 76.7
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.4e-42 176.8 157 75.8
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.4e-42 176.8 239 44.8
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.9e-42 176.4 172 77.9
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.9e-42 176.4 172 77.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 2.4e-42 176.0 172 78.5
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 4.2e-42 175.3 172 70.3
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 5.5e-42 174.9 171 80.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 9.3e-42 174.1 172 67.4
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 9.3e-42 174.1 165 68.5
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 2.1e-41 172.9 157 65.6
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.1e-41 172.9 164 75.6
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 2.7e-41 172.6 162 79.6
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.5e-41 172.2 172 66.3
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 4.6e-41 171.8 168 75.6
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 4.6e-41 171.8 165 75.8
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 4.6e-41 171.8 165 78.2
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 7.9e-41 171.0 167 67.1
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 7.9e-41 171.0 164 66.5
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.0e-40 170.6 172 75.6
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.0e-40 170.6 163 79.8
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.0e-40 170.6 151 81.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 3.0e-40 169.1 166 78.3
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.0e-40 169.1 172 74.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.0e-40 169.1 172 76.2
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 5.1e-40 168.3 164 78.0
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.1e-39 167.2 159 66.7
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.9e-39 166.4 175 64.0
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 4.3e-39 165.2 158 81.0
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 4.3e-39 165.2 162 74.1
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 5.6e-39 164.9 173 74.6
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 4.8e-38 161.8 158 78.5
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 6.2e-38 161.4 158 78.5
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.1e-37 160.6 164 64.6
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.8e-37 159.8 161 77.6
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.8e-37 159.8 157 57.3
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 3.1e-37 159.1 173 71.7
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 6.9e-37 157.9 163 63.8
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.0e-36 156.4 183 58.5
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 7.6e-36 154.5 172 49.4
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.0e-35 154.1 170 61.8
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.2e-35 152.9 175 73.7
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.9e-35 152.5 173 70.5
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.9e-35 152.5 176 72.7
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.1e-34 150.6 163 62.0
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.4e-34 150.2 176 64.2
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.4e-34 150.2 159 63.5
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.4e-34 150.2 176 60.2
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 166 62.0
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.5e-34 149.4 176 72.2
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 2.5e-34 149.4 175 73.1
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 4.2e-34 148.7 148 80.4
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.1e-33 146.4 175 72.6
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.7e-33 146.0 164 53.0
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.0e-33 144.8 159 62.3
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 6.0e-33 144.8 138 73.9
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 7.9e-33 144.4 170 59.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 7.9e-33 144.4 170 59.4
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.0e-32 144.1 176 58.0
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.3e-32 143.7 169 48.5
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.3e-32 143.7 170 59.4
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.3e-32 142.9 173 70.5
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 2.3e-32 142.9 163 48.5
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 3.0e-32 142.5 165 59.4
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 3.0e-32 142.5 169 47.9
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 3.9e-32 142.1 173 70.5
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 3.9e-32 142.1 173 70.5
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.9e-32 142.1 155 61.3
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 5.1e-32 141.7 173 69.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.1e-31 140.6 167 58.1
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.1e-31 140.6 167 58.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.1e-31 140.6 167 58.1
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.3e-31 139.0 175 58.3
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 3.3e-31 139.0 162 59.9
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 4.3e-31 138.7 174 69.5
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.3e-31 138.7 164 48.2
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 7.4e-31 137.9 162 48.8
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 6.3e-30 134.8 152 60.5
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 166 69.9
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 170 68.8
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.5e-28 130.2 131 67.9
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 2.6e-28 129.4 146 62.3
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 8.5e-27 124.4 158 55.7
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.1e-26 124.0 128 69.5
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.9e-26 123.2 143 74.1
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.0e-24 115.9 134 62.7
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 4.8e-22 108.6 99 78.8
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.1e-21 107.5 86 62.8
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 3.1e-21 105.9 101 76.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 5.3e-21 105.1 120 64.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 6.9e-21 104.8 105 71.4
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.0e-20 103.2 152 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 1.6e-17 93.6 108 42.6
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 4.4e-15 85.5 91 72.5
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 4.8e-14 82.0 81 50.6
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.0e-11 74.3 44 72.7
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 6.5e-11 71.6 48 62.5


User provided reference genes

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