Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 2.8e-299 1031.2 530 100.0
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.8e-237 825.9 541 78.6
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 4.5e-204 714.9 437 80.8
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 7.7e-204 714.1 437 80.8
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 2.9e-203 712.2 527 70.0
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 2.2e-174 616.3 440 68.9
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 1.1e-173 614.0 423 70.4
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.8e-173 613.2 428 69.2
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 1.8e-173 613.2 422 71.1
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 9.2e-173 610.9 422 70.1
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 1.3e-171 607.1 426 67.8
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.9e-171 605.5 426 67.8
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 6.6e-171 604.7 424 70.0
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.3e-170 602.4 426 67.6
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 5.6e-170 601.7 428 67.3
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.6e-169 599.0 426 67.8
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 6.2e-169 598.2 426 69.2
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 4.0e-168 595.5 418 68.9
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 5.2e-168 595.1 440 66.4
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 2.0e-167 593.2 423 66.4
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 7.5e-167 591.3 420 68.8
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 1.3e-166 590.5 416 66.8
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.7e-166 590.1 444 65.8
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 1.7e-166 590.1 409 68.9
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 4.9e-166 588.6 414 67.9
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 1.4e-165 587.0 424 67.7
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 3.2e-165 585.9 415 68.2
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 4.1e-165 585.5 435 66.0
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 1.6e-164 583.6 410 67.6
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 2.0e-164 583.2 420 66.2
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 8.6e-163 577.8 431 65.2
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 1.8e-160 570.1 421 65.8
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 4.0e-160 568.9 417 65.2
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 3.7e-158 562.4 426 63.6
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 3.7e-158 562.4 403 65.8
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 9.2e-157 557.8 412 67.2
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 1.2e-156 557.4 409 65.0
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 1.6e-156 557.0 409 65.0
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 6.0e-156 555.1 411 65.2
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 3.9e-155 552.4 439 62.4
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 1.5e-154 550.4 429 62.5
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 3.3e-154 549.3 419 61.8
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 5.6e-154 548.5 474 58.6
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 7.3e-154 548.1 400 63.8
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 9.5e-154 547.7 420 61.2
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 2.8e-153 546.2 422 63.5
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 8.1e-153 544.7 406 62.6
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 1.4e-152 543.9 442 61.1
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 1.4e-152 543.9 525 53.7
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 3.1e-152 542.7 414 63.5
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 3.1e-152 542.7 407 62.7
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 4.0e-152 542.3 407 62.7
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 4.0e-152 542.3 414 64.3
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 8.9e-152 541.2 430 59.8
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 2.0e-151 540.0 443 59.1
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 7.6e-151 538.1 430 61.9
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 1.7e-150 537.0 426 62.0
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 1.7e-150 537.0 442 59.5
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 1.7e-150 537.0 400 62.5
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 2.2e-150 536.6 423 61.5
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 2.9e-150 536.2 425 62.1
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 3.8e-150 535.8 529 52.6
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 3.8e-150 535.8 411 61.6
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 4.9e-150 535.4 417 63.3
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 6.4e-150 535.0 419 60.4
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 2.4e-149 533.1 430 59.1
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 3.2e-149 532.7 424 59.4
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 4.1e-149 532.3 433 60.5
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 5.4e-149 531.9 441 58.7
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 9.2e-149 531.2 449 59.2
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 1.2e-148 530.8 422 61.1
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 1.2e-148 530.8 423 60.8
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 1.2e-148 530.8 414 62.1
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 7.8e-148 528.1 423 60.8
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 1.7e-147 526.9 405 62.0
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 2.1e-145 520.0 424 59.0
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 2.6e-143 513.1 376 66.2
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 1.7e-142 510.4 419 58.0
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 8.4e-142 508.1 299 82.6
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 7.1e-141 505.0 480 54.4
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 9.3e-141 504.6 397 61.0
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 6.4e-134 481.9 389 58.9
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 8.7e-131 471.5 365 59.7
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 1.0e-123 448.0 291 70.8
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 3.3e-122 443.0 283 72.1
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 4.3e-122 442.6 297 71.4
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 2.0e-111 407.1 386 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.6e-111 406.8 439 44.2
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 2.2e-110 403.7 389 50.1
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 4.6e-108 396.0 297 65.0
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 1.3e-105 387.9 336 51.8
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.2e-103 381.3 277 63.5
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 3.4e-103 379.8 256 72.3
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 5.2e-91 339.3 264 66.7
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 1.5e-90 337.8 228 70.6
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 7.4e-90 335.5 235 68.5
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 9.7e-90 335.1 217 69.6
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.7e-89 333.2 432 44.7
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 4.8e-89 332.8 365 47.4
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 2.0e-87 327.4 366 45.6
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 3.5e-87 326.6 444 40.8
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.4e-80 303.9 247 65.6
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 4.4e-58 229.9 530 31.1
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 2.9e-57 227.3 328 37.8
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 2.4e-56 224.2 168 61.3
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.5e-53 214.2 168 61.3
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 1.4e-43 181.8 103 83.5
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 1.4e-40 171.8 297 30.6
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 6.6e-38 162.9 410 30.7
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 1.5e-37 161.8 482 25.5
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 1.6e-36 158.3 189 45.5
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 2.8e-36 157.5 136 57.4
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 6.8e-35 152.9 214 43.5
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 8.9e-35 152.5 131 55.0
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.2e-32 144.1 107 66.4
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 2.3e-30 137.9 136 51.5
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 8.7e-30 136.0 319 34.2
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 5.8e-26 123.2 91 65.9
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 5.8e-26 123.2 148 43.9
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 2.3e-22 111.3 62 80.6
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 1.3e-17 95.5 98 50.0
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 9.3e-16 89.4 66 66.7
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 5.8e-10 70.1 35 74.3
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-07 62.4 57 52.6


User provided reference genes

Program Settings