Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.0e-178 629.0 330 100.0
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 3.4e-157 558.5 332 91.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.1e-152 543.5 330 88.2
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 3.3e-152 542.0 330 88.2
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 3.3e-152 542.0 330 88.2
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.2e-148 529.3 330 85.8
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.6e-138 496.5 345 74.5
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 2.7e-138 495.7 335 74.9
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 4.3e-136 488.4 335 73.7
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 2.1e-135 486.1 334 80.2
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 6.2e-135 484.6 337 77.7
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 6.2e-135 484.6 338 72.2
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 6.2e-135 484.6 340 72.9
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 8.1e-135 484.2 337 72.4
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.1e-135 484.2 337 72.4
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 3.1e-134 482.3 336 73.5
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 8.9e-134 480.7 336 73.2
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.2e-133 480.3 334 79.3
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.4e-133 478.8 334 73.4
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.4e-133 478.4 335 74.3
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.9e-133 477.2 340 72.6
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 6.4e-132 474.6 263 85.6
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.4e-131 473.4 335 73.1
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 9.2e-131 470.7 338 70.4
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 2.7e-130 469.2 338 70.4
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.5e-130 468.8 339 70.8
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.6e-130 468.4 351 74.9
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.0e-129 467.2 335 71.3
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.0e-129 467.2 338 69.8
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.3e-129 466.8 339 71.4
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 3.9e-129 465.3 332 69.9
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.1e-128 463.8 263 84.4
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 5.6e-128 461.5 340 69.1
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.2e-127 460.3 338 70.7
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 3.6e-127 458.8 336 70.8
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 6.2e-127 458.0 336 69.9
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 6.2e-127 458.0 338 69.2
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.4e-126 456.8 336 69.6
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 3.1e-126 455.7 384 68.5
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.0e-126 455.3 331 69.5
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.8e-126 454.5 338 70.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.2e-125 453.8 331 74.6
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 2.0e-125 453.0 333 71.8
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 2.0e-125 453.0 262 82.8
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 5.4e-123 444.9 334 73.4
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 7.1e-123 444.5 335 68.7
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 9.2e-123 444.1 340 66.8
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 2.7e-122 442.6 339 67.6
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 6.0e-122 441.4 331 68.6
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.3e-121 440.3 259 81.9
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 8.7e-121 437.6 271 78.2
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 8.7e-121 437.6 271 78.2
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.9e-120 436.4 262 80.2
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 4.3e-120 435.3 338 71.9
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 4.3e-120 435.3 336 67.6
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 4.3e-120 435.3 271 77.9
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 4.3e-120 435.3 271 78.2
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.6e-120 434.9 342 66.7
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.6e-119 433.3 337 71.8
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.8e-118 429.9 336 68.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.4e-118 429.5 361 62.3
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 5.3e-118 428.3 374 63.4
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.2e-117 427.2 346 62.7
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-117 427.2 257 79.0
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.5e-117 426.8 335 66.3
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.9e-116 422.5 333 65.5
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 4.9e-116 421.8 339 64.9
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 8.4e-116 421.0 340 66.5
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.1e-115 420.6 363 66.4
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.2e-115 419.1 353 68.0
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 4.2e-115 418.7 259 78.8
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 7.1e-115 417.9 310 70.3
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.6e-114 416.8 342 63.7
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 7.8e-114 414.5 344 65.4
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 8.7e-113 411.0 337 63.5
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.5e-112 410.2 338 63.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 9.6e-112 407.5 389 56.8
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 4.8e-111 405.2 268 72.0
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.8e-110 403.3 348 62.4
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.5e-109 400.2 269 72.1
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.0e-109 399.8 246 79.3
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 5.8e-109 398.3 337 60.5
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 2.9e-108 396.0 244 90.2
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 3.8e-108 395.6 331 60.7
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.1e-107 394.0 331 61.9
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.1e-107 394.0 266 69.9
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.7e-106 389.4 332 60.8
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 3.0e-105 386.0 214 84.6
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 5.1e-105 385.2 207 86.5
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 2.5e-104 382.9 224 81.7
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 7.4e-104 381.3 331 60.1
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 7.4e-104 381.3 290 67.2
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.6e-103 380.2 333 59.8
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 2.0e-101 373.2 363 57.6
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.7e-100 370.2 332 57.8
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.1e-99 367.5 332 56.9
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.0e-97 360.9 257 68.5
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.5e-96 357.1 296 62.5
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 3.3e-96 355.9 330 56.4
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 5.7e-96 355.1 317 60.9
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 2.6e-93 346.3 332 53.3
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 5.8e-93 345.1 273 59.7
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 2.2e-92 343.2 332 53.6
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 2.2e-92 343.2 332 53.6
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.4e-91 340.5 332 53.3
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.5e-91 338.6 346 59.0
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.6e-90 337.0 270 64.1
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.5e-90 335.9 258 65.9
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 6.1e-90 335.1 331 57.1
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 3.7e-87 325.9 331 55.6
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 4.8e-87 325.5 332 54.2
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 5.3e-86 322.0 331 53.2
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-85 320.9 331 53.2
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.2e-85 320.9 337 50.4
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.2e-84 316.6 331 54.7
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.9e-83 313.5 174 85.6
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.2e-75 286.2 160 82.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.9e-73 279.3 167 79.0
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 6.7e-73 278.5 261 51.3
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 6.3e-71 271.9 174 71.3
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.7e-66 256.5 226 54.9
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.1e-62 244.6 153 77.1
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.0e-62 241.9 150 76.7
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 9.1e-62 241.5 317 42.9
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.4e-48 196.4 192 59.4
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.3e-47 192.2 113 80.5
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.0e-45 187.2 119 76.5
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 4.4e-40 169.5 245 40.0
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.1e-38 164.9 100 79.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 3.1e-33 146.7 100 71.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.7e-31 141.0 80 81.2
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 7.5e-24 115.5 135 53.3
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.2e-21 108.2 56 78.6
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.8e-18 97.1 140 50.0
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.7e-18 96.3 51 86.3
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.1e-14 85.1 59 64.4
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.1e-14 83.2 48 79.2
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 7.1e-14 82.4 55 78.2
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.2e-14 82.0 76 55.3
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 4.7e-10 69.7 372 20.2


User provided reference genes

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