Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 3.0e-247 858.6 628 100.0
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.3e-165 587.4 322 90.7
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.7e-165 585.9 322 90.7
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 6.4e-165 585.1 322 90.7
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 1.2e-160 570.9 321 89.4
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 5.3e-151 538.9 317 85.2
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 6.4e-149 531.9 317 84.9
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 5.4e-148 528.9 316 84.5
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 2.5e-145 520.0 317 82.3
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 2.5e-145 520.0 317 82.3
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 2.8e-144 516.5 318 81.8
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 5.3e-143 512.3 335 79.7
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 9.0e-143 511.5 318 82.4
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 7.6e-142 508.4 317 80.4
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 8.4e-141 505.0 316 79.1
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 1.4e-140 504.2 315 78.7
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 1.4e-140 504.2 318 79.6
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 3.2e-140 503.1 319 80.3
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 1.6e-139 500.7 320 79.7
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 2.1e-139 500.4 319 79.6
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 6.0e-139 498.8 318 79.9
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 3.0e-138 496.5 318 80.5
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 1.5e-137 494.2 319 78.4
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 3.3e-137 493.0 318 78.0
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 5.6e-137 492.3 318 78.6
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 9.6e-137 491.5 321 78.5
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 2.8e-136 490.0 316 78.8
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 3.7e-136 489.6 317 78.9
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 3.7e-136 489.6 323 77.7
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 6.2e-136 488.8 314 77.4
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 8.1e-136 488.4 317 77.9
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 1.1e-135 488.0 315 76.8
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 1.1e-135 488.0 315 77.8
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 1.4e-135 487.6 318 78.0
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 1.8e-135 487.3 317 78.2
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 5.3e-135 485.7 317 77.6
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 5.3e-135 485.7 316 78.2
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 9.0e-135 485.0 319 77.4
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.5e-134 484.2 318 76.1
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 1.5e-134 484.2 319 78.1
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 4.5e-134 482.6 314 76.8
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 9.9e-134 481.5 310 77.1
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 9.9e-134 481.5 316 76.9
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 1.7e-133 480.7 310 78.4
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 2.9e-133 479.9 318 76.1
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 4.9e-133 479.2 317 77.3
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 6.4e-133 478.8 312 78.5
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.9e-132 477.2 315 76.2
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 2.5e-132 476.9 315 76.2
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 4.2e-132 476.1 317 74.8
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 9.3e-132 474.9 317 75.1
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 9.3e-132 474.9 316 75.9
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.6e-131 474.2 315 74.6
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 3.5e-131 473.0 321 74.5
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 3.5e-131 473.0 321 74.5
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 4.6e-131 472.6 321 74.5
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 4.6e-131 472.6 342 74.6
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 4.6e-131 472.6 316 76.9
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 3.0e-130 469.9 321 74.1
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 3.0e-130 469.9 318 76.4
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 3.9e-130 469.5 318 74.2
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 1.1e-129 468.0 312 74.4
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 1.5e-129 467.6 316 75.3
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 1.5e-129 467.6 321 73.8
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 1.5e-129 467.6 313 77.0
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 2.5e-129 466.8 351 68.7
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 4.3e-129 466.1 316 74.1
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 4.3e-129 466.1 317 73.8
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 4.3e-129 466.1 316 73.4
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 7.4e-129 465.3 318 77.0
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 2.8e-128 463.4 310 75.2
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.8e-128 463.4 322 72.4
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 3.7e-128 463.0 321 73.5
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 5.3e-127 459.1 307 74.9
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 2.0e-126 457.2 328 72.6
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.9e-125 453.4 319 74.3
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 2.9e-125 453.4 312 74.7
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 4.2e-124 449.5 319 72.4
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 3.5e-123 446.4 389 63.8
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 1.0e-122 444.9 322 71.4
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.0e-122 443.4 337 71.5
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 3.9e-122 443.0 321 72.6
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 7.4e-121 438.7 346 68.5
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 1.8e-119 434.1 324 69.8
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 6.9e-119 432.2 315 68.9
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 1.2e-118 431.4 316 70.3
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 3.3e-113 413.3 558 46.8
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 1.2e-107 394.8 269 74.7
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 7.9e-107 392.1 257 77.0
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 2.6e-105 387.1 317 62.5
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 1.3e-104 384.8 281 70.8
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 7.0e-103 379.0 297 66.0
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 5.9e-102 375.9 305 63.3
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 2.0e-97 360.9 225 80.0
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 3.4e-89 333.6 293 58.4
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 1.3e-88 331.6 222 75.7
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 2.4e-87 327.4 225 72.9
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 1.3e-72 278.5 191 74.3
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 3.7e-72 276.9 313 52.4
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.1e-68 265.4 189 74.6
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 3.1e-58 230.7 142 76.1
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 2.0e-49 201.4 181 61.3
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 4.4e-49 200.3 155 65.8
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 3.1e-42 177.6 318 36.2
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 2.4e-31 141.4 195 46.2
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 4.3e-28 130.6 80 80.0
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 1.6e-27 128.6 117 62.4
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 4.8e-27 127.1 69 84.1
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 1.4e-26 125.6 93 69.9
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 1.2e-25 122.5 92 69.6
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 3.4e-25 120.9 118 59.3
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 6.0e-22 110.2 59 81.4
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 7.4e-20 103.2 61 78.7
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 3.7e-19 100.9 61 77.0
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.5e-17 95.5 53 81.1
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 5.8e-17 93.6 62 74.2
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 1.6e-14 85.5 48 83.3
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 1.6e-14 85.5 48 83.3
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 7.9e-14 83.2 67 67.2
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 1.5e-12 79.0 39 92.3
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 5.7e-12 77.0 38 86.8
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 7.4e-12 76.6 112 36.6


User provided reference genes

Program Settings