Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 1.2e-292 1009.2 561 100.0
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 2.2e-241 839.0 563 86.0
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 4.0e-235 818.1 563 84.2
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 2.0e-234 815.8 563 84.0
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 3.1e-219 765.4 547 78.8
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 5.5e-200 701.4 539 72.2
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 5.1e-198 694.9 538 71.0
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 9.6e-197 690.6 527 71.7
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.2e-191 673.7 539 70.3
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 2.1e-191 672.9 494 74.3
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.1e-189 667.2 527 74.6
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 5.3e-187 658.3 490 73.1
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 1.3e-185 653.7 531 69.7
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 8.5e-185 651.0 499 74.3
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 1.1e-179 634.0 531 67.2
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.5e-178 630.2 528 71.8
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 3.7e-172 609.0 563 63.2
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 8.2e-172 607.8 487 69.6
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 2.5e-168 596.3 494 69.6
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.7e-167 592.8 526 69.8
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 6.1e-167 591.7 494 67.8
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 4.8e-164 582.0 564 60.8
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 1.1e-163 580.9 494 68.2
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.4e-163 579.7 494 68.4
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 1.0e-161 574.3 539 61.2
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 1.1e-160 570.9 497 64.6
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 1.5e-160 570.5 494 65.8
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.0e-157 560.1 553 61.1
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 7.5e-157 558.1 500 62.6
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.3e-156 557.4 553 61.1
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.2e-156 556.6 554 61.0
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 1.2e-154 550.8 499 66.3
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 5.9e-154 548.5 533 61.4
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 2.9e-153 546.2 624 55.3
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 7.2e-152 541.6 531 66.3
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 1.5e-149 533.9 493 62.7
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 4.4e-149 532.3 531 63.7
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 2.4e-147 526.6 433 70.0
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 1.5e-144 517.3 466 63.5
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 8.0e-143 511.5 501 58.9
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 2.0e-141 506.9 498 58.6
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 3.7e-140 502.7 498 58.0
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 9.2e-139 498.0 493 59.4
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 1.2e-138 497.7 490 59.2
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 1.6e-138 497.3 504 58.3
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 5.9e-138 495.4 498 58.2
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 1.3e-137 494.2 504 57.1
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 2.3e-137 493.4 507 57.0
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 2.5e-136 490.0 537 55.9
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 4.3e-136 489.2 490 60.2
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 3.6e-135 486.1 558 54.5
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 5.2e-134 482.3 434 64.5
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 4.9e-132 475.7 500 58.8
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 1.4e-131 474.2 537 57.4
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 1.4e-131 474.2 495 58.8
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 2.0e-130 470.3 497 58.1
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 2.7e-130 469.9 502 58.2
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 8.6e-129 464.9 495 58.6
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.1e-128 464.5 499 57.5
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 1.1e-128 464.5 499 57.5
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 1.1e-128 464.5 501 58.7
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 5.6e-128 462.2 498 57.0
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 4.7e-127 459.1 493 57.0
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 2.3e-126 456.8 456 59.9
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 4.4e-125 452.6 498 56.0
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 3.5e-122 443.0 487 56.1
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 8.9e-118 428.3 352 67.6
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 7.6e-117 425.2 582 48.3
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 1.1e-115 421.4 467 57.8
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.5e-112 410.2 420 59.3
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 5.4e-107 392.5 491 50.9
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 9.6e-104 381.7 495 49.3
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 4.8e-103 379.4 413 57.6
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 5.3e-102 375.9 494 51.2
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 2.5e-96 357.1 494 49.4
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 7.4e-96 355.5 312 65.4
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 3.1e-94 350.1 371 58.8
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 6.4e-92 342.4 394 54.1
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 4.2e-91 339.7 419 54.4
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 1.5e-88 331.3 255 70.6
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 7.0e-54 216.1 314 49.0
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 2.2e-52 211.1 309 46.6
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 1.7e-39 168.3 231 46.8
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 9.1e-38 162.5 320 38.4
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.7e-37 161.0 173 52.6
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 1.6e-29 135.2 109 90.8
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 2.9e-28 131.0 106 61.3
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 1.8e-25 121.7 228 40.8
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 1.5e-24 118.6 161 50.9
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 3.4e-24 117.5 75 82.7
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 2.2e-23 114.8 552 29.2
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 3.0e-20 104.4 71 74.6
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 2.5e-19 101.3 332 34.0
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 8.0e-18 96.3 64 70.3
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.8e-17 95.1 53 92.5
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 6.8e-17 93.2 671 27.0
arahy.Tifrunner.gnm1.ann1.DKTU9V Arachis hypogaea HOM05D007238 ORTHO05D009206 1.7e-15 88.6 279 34.1
CSS0039429 Camellia sinensis var. sinensis HOM05D037602 ORTHO05D033921 6.6e-12 76.6 75 57.3
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 8.6e-12 76.3 44 86.4
CSS0030533 Camellia sinensis var. sinensis HOM05D037602 ORTHO05D033921 1.5e-11 75.5 75 57.3
CSS0027374 Camellia sinensis var. sinensis HOM05D037602 ORTHO05D033921 1.2e-10 72.4 75 56.0
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 8.1e-10 69.7 53 67.9
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 3.1e-09 67.8 37 89.2
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 1.2e-08 65.9 58 63.8
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.2e-08 65.9 58 63.8
FvH4_5g27460 Fragaria vesca HOM05D007238 ORTHO05D009206 7.5e-08 63.2 46 65.2
FvH4_5g27461 Fragaria vesca HOM05D007238 ORTHO05D009206 2.9e-07 61.2 86 44.2
FAN13G3012 Fragaria x ananassa HOM05D007238 ORTHO05D009206 7.1e-06 56.6 41 63.4


User provided reference genes

Program Settings