Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 1.3e-165 586.3 289 100.0
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 3.5e-142 508.4 287 85.7
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.7e-134 482.3 288 80.9
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 3.9e-133 478.4 289 83.0
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.5e-132 475.7 310 76.5
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 2.5e-132 475.7 310 76.5
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 4.0e-130 468.4 289 79.2
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.4e-129 464.9 289 77.9
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.2e-113 413.7 257 79.0
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 2.7e-110 402.5 295 67.5
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 2.2e-104 382.9 297 65.0
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 3.8e-104 382.1 287 63.4
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 7.9e-102 374.4 289 63.0
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 1.3e-101 373.6 281 65.1
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 3.0e-101 372.5 281 64.1
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 3.9e-101 372.1 292 62.7
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 6.7e-101 371.3 274 66.8
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 5.6e-100 368.2 298 60.4
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 9.6e-100 367.5 289 63.0
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.6e-99 366.7 283 64.3
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 1.0e-96 357.5 294 60.5
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 9.3e-95 350.9 292 58.2
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 4.6e-94 348.6 285 59.6
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 6.0e-94 348.2 285 59.6
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 5.1e-93 345.1 292 57.9
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 6.7e-93 344.7 285 58.9
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 8.7e-93 344.4 276 62.7
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 3.3e-92 342.4 277 62.8
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 7.4e-92 341.3 291 58.4
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 1.3e-91 340.5 291 57.7
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 3.7e-91 339.0 264 63.3
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 4.8e-91 338.6 285 58.2
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 1.1e-90 337.4 293 57.0
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.1e-90 337.4 285 57.9
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 2.4e-90 336.3 287 57.8
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 3.1e-90 335.9 267 60.7
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 6.9e-90 334.7 275 57.5
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 2.6e-89 332.8 292 56.5
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 4.5e-89 332.0 287 57.5
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 4.5e-89 332.0 281 58.7
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 4.5e-89 332.0 244 67.2
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 7.7e-89 331.3 267 59.9
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 1.3e-88 330.5 286 56.3
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 1.3e-88 330.5 300 57.3
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 2.2e-88 329.7 295 54.9
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 2.9e-88 329.3 278 58.3
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 6.5e-88 328.2 306 54.6
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 8.5e-88 327.8 291 54.6
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 1.1e-87 327.4 294 54.8
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 4.2e-87 325.5 281 56.9
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 5.5e-87 325.1 270 58.9
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 5.5e-87 325.1 270 58.9
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 5.5e-87 325.1 271 60.5
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 3.6e-86 322.4 295 53.6
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 4.6e-86 322.0 283 56.5
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 3.0e-85 319.3 299 54.5
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 5.1e-85 318.5 281 56.2
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 6.7e-85 318.2 276 56.5
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 1.1e-84 317.4 276 58.7
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 2.0e-84 316.6 276 58.7
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 2.5e-84 316.2 236 65.7
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 3.3e-84 315.8 288 53.1
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 4.3e-84 315.5 307 49.8
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 4.3e-84 315.5 299 53.2
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 1.7e-83 313.5 214 66.4
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 3.7e-83 312.4 297 53.9
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 6.3e-83 311.6 288 54.9
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 2.4e-82 309.7 275 56.0
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 6.9e-82 308.1 303 51.2
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 6.9e-82 308.1 303 51.2
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 1.5e-81 307.0 300 51.0
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 1.5e-81 307.0 300 51.0
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 2.6e-81 306.2 249 59.4
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 2.2e-80 303.1 284 53.9
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 8.5e-80 301.2 272 55.9
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 1.9e-79 300.1 284 53.5
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 7.2e-79 298.1 271 55.0
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 3.6e-78 295.8 370 44.1
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 3.6e-78 295.8 292 51.4
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 2.3e-77 293.1 308 50.6
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 5.1e-77 292.0 273 53.8
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 4.4e-76 288.9 254 55.1
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 1.1e-74 284.3 298 48.7
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 3.5e-73 279.3 271 51.7
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 1.4e-71 273.9 226 60.6
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 7.2e-71 271.6 195 67.2
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 4.7e-70 268.9 246 52.0
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 8.0e-70 268.1 273 49.5
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 8.0e-70 268.1 220 59.1
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.8e-69 266.9 247 53.0
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 2.3e-69 266.5 272 50.4
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 3.9e-69 265.8 286 48.3
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 6.7e-69 265.0 191 65.4
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.1e-66 257.7 263 51.0
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.4e-66 257.3 205 62.0
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 1.8e-66 256.9 229 54.1
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 4.1e-66 255.8 188 66.0
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 5.3e-66 255.4 293 47.8
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 9.1e-66 254.6 289 50.2
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 4.5e-65 252.3 274 48.5
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 5.9e-65 251.9 274 48.5
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 8.5e-64 248.1 230 51.7
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 8.5e-64 248.1 192 63.5
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 1.9e-63 246.9 287 47.7
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 5.2e-61 238.8 309 41.4
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 1.5e-60 237.3 274 48.9
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 8.3e-59 231.5 368 37.0
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 4.1e-58 229.2 216 52.3
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 7.7e-57 224.9 197 58.9
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 7.7e-57 224.9 269 44.6
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 8.8e-53 211.5 263 44.1
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 1.0e-48 198.0 216 46.8
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 1.0e-48 198.0 181 53.6
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 1.4e-45 187.6 168 52.4
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 7.0e-42 175.3 182 48.4
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 1.6e-38 164.1 177 44.6
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 6.1e-38 162.2 145 56.6
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 1.3e-35 154.5 82 80.5
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 8.0e-30 135.2 177 41.2
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 2.2e-27 127.1 234 35.9
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.5e-23 114.4 114 48.2
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 5.6e-23 112.5 210 31.9
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 1.4e-21 107.8 148 45.9
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 5.2e-21 105.9 105 47.6
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 4.0e-13 79.7 40 80.0
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 2.0e-12 77.4 122 36.1
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 1.3e-11 74.7 107 35.5
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 8.4e-11 72.0 50 58.0
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 2.4e-10 70.5 44 70.5


User provided reference genes

Program Settings