Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 2.0e-164 582.4 298 100.0
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 9.5e-127 457.2 304 79.6
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 8.7e-112 407.5 300 75.3
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 3.3e-111 405.6 300 74.7
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 1.8e-101 373.2 299 70.9
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 1.9e-79 300.1 204 67.6
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 3.7e-78 295.8 257 60.3
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 6.3e-78 295.0 289 56.1
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 6.3e-78 295.0 222 68.0
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 1.1e-77 294.3 222 68.0
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 1.8e-77 293.5 241 63.9
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 2.0e-76 290.0 211 66.4
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 1.0e-75 287.7 207 66.7
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 1.3e-75 287.3 268 58.6
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 1.7e-75 287.0 280 56.1
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 2.2e-75 286.6 292 53.4
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 5.0e-75 285.4 210 66.7
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 6.5e-75 285.0 219 63.9
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 1.4e-74 283.9 295 53.6
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 1.9e-74 283.5 299 54.2
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 7.2e-74 281.6 193 69.4
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 7.2e-74 281.6 204 64.7
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 7.2e-74 281.6 205 68.8
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 1.2e-73 280.8 192 69.8
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.6e-73 280.4 205 68.3
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.6e-73 280.4 205 67.8
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.7e-73 279.6 205 67.8
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 6.1e-73 278.5 193 68.4
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.4e-72 277.3 205 67.3
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 1.8e-72 276.9 196 67.3
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.3e-72 276.6 205 67.3
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 3.0e-72 276.2 167 81.4
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 3.0e-72 276.2 209 64.1
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 3.9e-72 275.8 205 67.3
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 5.1e-72 275.4 196 67.3
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 8.8e-72 274.6 201 65.2
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 8.8e-72 274.6 191 68.1
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 1.5e-71 273.9 202 66.3
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 3.3e-71 272.7 190 67.9
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 4.3e-71 272.3 291 50.5
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 5.7e-71 271.9 204 62.7
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 7.4e-71 271.6 214 62.6
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 2.8e-70 269.6 192 67.7
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 4.8e-70 268.9 208 61.5
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 1.8e-69 266.9 190 65.8
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 4.1e-69 265.8 185 68.1
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 1.5e-68 263.8 225 58.2
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 4.5e-68 262.3 198 61.6
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 5.9e-68 261.9 232 55.2
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 7.7e-68 261.5 223 59.6
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 1.0e-67 261.2 227 58.6
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 1.0e-67 261.2 190 67.9
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 1.3e-67 260.8 196 63.8
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 2.2e-67 260.0 192 62.5
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 2.2e-67 260.0 193 63.2
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 2.9e-67 259.6 190 63.7
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 2.9e-67 259.6 250 54.8
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 8.5e-67 258.1 196 63.3
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 1.4e-66 257.3 232 53.9
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.5e-66 256.5 187 64.2
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 2.5e-66 256.5 192 65.1
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 2.5e-66 256.5 191 65.4
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 2.5e-66 256.5 252 56.3
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 9.4e-66 254.6 194 63.4
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 9.4e-66 254.6 192 66.1
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 9.4e-66 254.6 192 64.1
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 9.4e-66 254.6 193 65.3
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 9.4e-66 254.6 187 64.2
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 9.4e-66 254.6 211 57.3
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 1.6e-65 253.8 192 64.1
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 1.6e-65 253.8 206 59.7
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 2.1e-65 253.4 192 64.1
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 2.1e-65 253.4 232 53.9
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 2.7e-65 253.1 192 64.6
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 3.6e-65 252.7 192 64.1
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 4.7e-65 252.3 258 52.7
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 1.0e-64 251.1 192 65.6
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 1.0e-64 251.1 192 63.0
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 1.0e-64 251.1 192 63.0
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 2.3e-64 250.0 192 65.1
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 7.4e-63 245.0 196 61.7
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 1.2e-60 237.7 195 59.5
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.5e-60 236.1 198 57.1
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 4.5e-60 235.7 209 57.9
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 2.9e-59 233.0 195 57.9
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 1.1e-58 231.1 194 58.8
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 1.5e-58 230.7 191 59.2
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 1.2e-57 227.6 181 64.6
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.7e-57 226.5 188 60.1
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 6.1e-57 225.3 214 54.7
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 8.0e-57 224.9 186 60.2
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 2.3e-56 223.4 210 55.7
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 2.2e-54 216.9 196 55.1
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 1.1e-53 214.5 197 55.3
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 7.0e-53 211.8 193 54.9
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 1.0e-51 208.0 196 52.0
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 3.2e-50 203.0 144 67.4
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 2.1e-49 200.3 183 50.8
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 2.7e-49 199.9 186 51.6
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 6.8e-48 195.3 146 63.0
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 1.5e-42 177.6 192 47.9
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 3.0e-40 169.9 135 64.4
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 4.4e-39 166.0 118 64.4
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 1.4e-37 161.0 136 63.2
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 7.0e-37 158.7 152 57.9
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 5.0e-35 152.5 154 52.6
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.1e-34 151.4 144 52.8
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 4.3e-34 149.4 122 63.9
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 4.3e-34 149.4 169 46.2
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.8e-33 146.7 116 62.1
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 1.3e-30 137.9 119 58.0
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 1.0e-27 128.3 124 52.4
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 3.0e-27 126.7 149 49.0
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 6.6e-27 125.6 183 37.2
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 7.3e-26 122.1 112 54.5
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 4.1e-21 106.3 126 49.2
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 6.0e-20 102.4 78 62.8
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.0e-19 101.7 95 54.7
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 8.6e-19 98.6 71 66.2
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 4.3e-18 96.3 215 31.6
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-16 90.1 113 37.2
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 4.7e-09 66.2 46 65.2
SEGI_09763 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.1e-08 65.1 64 53.1
SEGI_10524 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 4.0e-08 63.2 66 48.5
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 8.4e-06 55.5 85 31.8


User provided reference genes

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