Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G314300 Theobroma cacao HOM05D007271 ORTHO05D009217 0.0e+00 1083.2 556 100.0
Duzib068G0217 Durio zibethinus HOM05D007271 ORTHO05D009217 1.1e-258 896.3 552 83.7
Gorai.004G180600 Gossypium raimondii HOM05D007271 ORTHO05D009217 5.4e-240 834.3 552 77.4
Gohir.D08G173300 Gossypium hirsutum HOM05D007271 ORTHO05D009217 6.5e-238 827.4 552 76.6
Gorai.008G222100 Gossypium raimondii HOM05D007271 ORTHO05D009217 4.1e-232 808.1 557 76.1
Gohir.D12G206700 Gossypium hirsutum HOM05D007271 ORTHO05D009217 2.7e-231 805.4 564 75.7
Gohir.A08G152200 Gossypium hirsutum HOM05D007271 ORTHO05D009217 5.6e-229 797.7 554 74.5
Gohir.A12G204300 Gossypium hirsutum HOM05D007271 ORTHO05D009217 4.7e-228 794.7 559 74.8
Ciclev10003885m.g Citrus clementina HOM05D007271 ORTHO05D009217 5.7e-165 585.1 509 58.3
Dinv29036 Davidia involucrata HOM05D007271 ORTHO05D009217 8.2e-164 581.3 495 60.2
Hma1.2p1_0635F.1_g193160 Hydrangea macrophylla HOM05D007271 ORTHO05D009217 1.2e-162 577.4 500 58.4
Cpa.g.sc104.82 Carica papaya HOM05D007271 ORTHO05D009217 3.4e-162 575.9 520 56.3
Manes.17G011200 Manihot esculenta HOM05D007271 ORTHO05D009217 3.4e-162 575.9 492 59.6
TAR375G0504 Trochodendron aralioides HOM05D007271 ORTHO05D009217 1.4e-160 570.5 499 57.5
PGR042G3154 Punica granatum HOM05D007271 ORTHO05D009217 1.0e-158 564.3 503 55.7
Oeu061071.1 Olea europaea HOM05D007271 ORTHO05D009217 3.0e-158 562.8 534 55.8
Potri.001G133700 Populus trichocarpa HOM05D007271 ORTHO05D009217 1.6e-156 557.0 530 54.9
Haze_08102 Corylus avellana HOM05D007271 ORTHO05D009217 4.8e-156 555.4 532 56.6
CiPaw.12G070300 Carya illinoinensis HOM05D007271 ORTHO05D009217 8.2e-156 554.7 500 57.6
Eucgr.E01257 Eucalyptus grandis HOM05D007271 ORTHO05D009217 4.1e-155 552.4 483 56.1
Atru.chr6.1575 Acer truncatum HOM05D007271 ORTHO05D009217 2.6e-154 549.7 506 55.9
Nitab4.5_0005761g0060 Nicotiana tabacum HOM05D007271 ORTHO05D009217 1.7e-153 547.0 508 55.1
Cc08_g04070 Coffea canephora HOM05D007271 ORTHO05D009217 2.9e-153 546.2 514 54.3
TWI14G0446 Tripterygium wilfordii HOM05D007271 ORTHO05D009217 2.5e-152 543.1 526 52.9
Prupe.5G024200 Prunus persica HOM05D007271 ORTHO05D009217 7.2e-152 541.6 527 55.6
Lj8A323T49 Lonicera japonica HOM05D007271 ORTHO05D009217 7.9e-151 538.1 509 54.4
Nitab4.5_0000109g0130 Nicotiana tabacum HOM05D007271 ORTHO05D009217 1.4e-150 537.3 503 54.5
Peaxi162Scf00185g01619 Petunia axillaris HOM05D007271 ORTHO05D009217 1.4e-150 537.3 505 55.0
FAN13G0287 Fragaria x ananassa HOM05D007271 ORTHO05D009217 3.0e-150 536.2 486 57.8
Cfa012560 Carpinus fangiana HOM05D007271 ORTHO05D009217 3.3e-149 532.7 522 55.4
FAN08G2102 Fragaria x ananassa HOM05D007271 ORTHO05D009217 3.3e-149 532.7 486 57.6
DCAR_008194 Daucus carota HOM05D007271 ORTHO05D009217 1.3e-148 530.8 519 51.4
FvH4_5g23600 Fragaria vesca HOM05D007271 ORTHO05D009217 1.3e-148 530.8 486 57.4
FAN18G2511 Fragaria x ananassa HOM05D007271 ORTHO05D009217 1.3e-148 530.8 486 57.4
RcHm_v2.0_Chr7g0212901 Rosa chinensis HOM05D007271 ORTHO05D009217 1.7e-148 530.4 491 57.8
GSVIVG01026362001 Vitis vinifera HOM05D007271 ORTHO05D009217 1.7e-148 530.4 498 54.4
PGSC0003DMG400035874 Solanum tuberosum HOM05D007271 ORTHO05D009217 3.1e-147 526.2 540 52.8
MD00G1000300 Malus domestica HOM05D007271 ORTHO05D009217 5.3e-147 525.4 560 52.5
Eucgr.D02621 Eucalyptus grandis HOM05D007271 ORTHO05D009217 6.9e-147 525.0 493 54.4
FAN18G2097 Fragaria x ananassa HOM05D007271 ORTHO05D009217 1.5e-146 523.9 486 56.8
Oeu001193.1 Olea europaea HOM05D007271 ORTHO05D009217 1.5e-146 523.9 515 53.4
DCAR_004256 Daucus carota HOM05D007271 ORTHO05D009217 5.9e-146 521.9 523 51.1
CAN.G773.8 Capsicum annuum HOM05D007271 ORTHO05D009217 1.0e-145 521.2 536 51.9
Peaxi162Scf00408g00227 Petunia axillaris HOM05D007271 ORTHO05D009217 2.2e-145 520.0 529 52.2
MBI04_g36029_MAGBIO Magnolia biondii HOM05D007271 ORTHO05D009217 2.9e-145 519.6 542 50.0
SalBow4G2871 Salvia bowleyana HOM05D007271 ORTHO05D009217 3.8e-145 519.2 522 51.5
Sopen08g024690 Solanum pennellii HOM05D007271 ORTHO05D009217 3.2e-144 516.2 524 52.9
Solyc08g076040.2 Solanum lycopersicum HOM05D007271 ORTHO05D009217 1.6e-143 513.8 501 53.7
Lalb_Chr05g0215551 Lupinus albus HOM05D007271 ORTHO05D009217 7.9e-143 511.5 489 56.2
Aqoxy7G00878 Aquilegia oxysepala HOM05D007271 ORTHO05D009217 5.3e-139 498.8 532 49.6
CANSAT21G2130 Cannabis sativa HOM05D007271 ORTHO05D009217 1.6e-138 497.3 551 50.5
Hma1.2p1_1486F.1_g286550 Hydrangea macrophylla HOM05D007271 ORTHO05D009217 6.5e-137 491.9 457 54.9
SalBow8G4630 Salvia bowleyana HOM05D007271 ORTHO05D009217 6.5e-137 491.9 498 50.2
Ca_25147_v3 Cicer arietinum L. HOM05D007271 ORTHO05D009217 8.5e-137 491.5 519 51.4
Lj2g0009393 Lotus japonicus HOM05D007271 ORTHO05D009217 1.1e-136 491.1 514 51.4
VMungo1215G2496 Vigna mungo HOM05D007271 ORTHO05D009217 1.1e-136 491.1 498 53.4
PGR031G3520 Punica granatum HOM05D007271 ORTHO05D009217 8.0e-135 485.0 475 53.1
Lj4g0015364 Lotus japonicus HOM05D007271 ORTHO05D009217 1.4e-134 484.2 531 49.5
Lsat_1_v5_gn_3_20940 Lactuca sativa HOM05D007271 ORTHO05D009217 6.7e-134 481.9 500 50.2
Medtr5g027460 Medicago truncatula HOM05D007271 ORTHO05D009217 8.8e-134 481.5 506 50.8
Glyma.01G009700 Glycine max HOM05D007271 ORTHO05D009217 2.6e-133 479.9 521 52.0
HanXRQChr17g0537681 Helianthus annuus HOM05D007271 ORTHO05D009217 2.8e-132 476.5 562 46.6
Psat2g139720 Pisum sativum HOM05D007271 ORTHO05D009217 2.0e-130 470.3 508 50.0
ClCG10G001150 Citrullus lanatus HOM05D007271 ORTHO05D009217 2.5e-128 463.4 544 47.6
Actinidia14763 Actinidia chinensis HOM05D007271 ORTHO05D009217 4.2e-128 462.6 504 48.2
Glyma.16G103000 Glycine max HOM05D007271 ORTHO05D009217 1.6e-127 460.7 507 48.9
Phvul.003G273200 Phaseolus vulgaris HOM05D007271 ORTHO05D009217 1.8e-126 457.2 468 51.5
arahy.Tifrunner.gnm1.ann1.3Y0Q41 Arachis hypogaea HOM05D007271 ORTHO05D009217 8.8e-126 454.9 475 49.9
Medtr8g071050 Medicago truncatula HOM05D007271 ORTHO05D009217 1.7e-124 450.7 454 51.8
MELO3C013807.2 Cucumis melo HOM05D007271 ORTHO05D009217 4.8e-124 449.1 524 46.9
CsaV3_3G001170 Cucumis sativus L. HOM05D007271 ORTHO05D009217 4.1e-123 446.0 512 48.0
arahy.Tifrunner.gnm1.ann1.CI81A0 Arachis hypogaea HOM05D007271 ORTHO05D009217 7.7e-122 441.8 475 49.5
unitig_748.g8136 Utricularia gibba HOM05D007271 ORTHO05D009217 1.0e-121 441.4 484 47.9
VMungo0251G3497 Vigna mungo HOM05D007271 ORTHO05D009217 1.7e-121 440.7 491 48.7
Psat4g109960 Pisum sativum HOM05D007271 ORTHO05D009217 5.5e-120 435.6 480 49.4
Phvul.002G132600 Phaseolus vulgaris HOM05D007271 ORTHO05D009217 9.5e-120 434.9 436 54.1
QL12p000436 Quercus lobata HOM05D007271 ORTHO05D009217 6.8e-118 428.7 428 54.9
TPR.G28964 Trifolium pratense HOM05D007271 ORTHO05D009217 1.5e-117 427.6 452 50.0
unitig_747.g21928 Utricularia gibba HOM05D007271 ORTHO05D009217 2.0e-117 427.2 517 45.8
PSO717G0049 Papaver somniferum HOM05D007271 ORTHO05D009217 2.2e-116 423.7 492 46.1
Os06g0113900 Oryza sativa ssp. japonica HOM05D007271 ORTHO05D009217 2.9e-113 413.3 515 44.9
Zm00001eb268890 Zea mays HOM05D007271 ORTHO05D009217 8.0e-111 405.2 518 43.4
Migut.A00579 Erythranthe guttata HOM05D007271 ORTHO05D009217 1.5e-109 401.0 511 44.8
Sed0019673 Sechium edule HOM05D007271 ORTHO05D009217 5.7e-109 399.1 527 46.1
ECA246G0509 Erigeron canadensis HOM05D007271 ORTHO05D009217 1.9e-104 384.0 519 43.0
Nitab4.5_0000809g0020 Nicotiana tabacum HOM05D007271 ORTHO05D009217 2.5e-104 383.6 357 54.6
FAN04G0635 Fragaria x ananassa HOM05D007271 ORTHO05D009217 3.9e-97 359.8 403 50.1
ATR0829G091 Amborella trichopoda HOM05D007271 ORTHO05D009217 4.0e-86 323.2 417 42.9
Ciclev10003404m.g Citrus clementina HOM05D007271 ORTHO05D009217 1.0e-73 282.0 496 36.1
unitig_32.g10968 Utricularia gibba HOM05D007271 ORTHO05D009217 2.5e-64 250.8 396 37.4
SEGI_35026 Sequoiadendron giganteum HOM05D007271 ORTHO05D009217 6.0e-58 229.6 528 29.5
HanXRQChr06g0172971 Helianthus annuus HOM05D007271 ORTHO05D009217 3.7e-47 193.7 164 57.9
HanXRQChr06g0172981 Helianthus annuus HOM05D007271 ORTHO05D009217 4.5e-45 186.8 202 46.5
COL.COLO4_16886 Corchorus olitorius HOM05D007271 ORTHO05D009217 9.7e-40 169.1 121 73.6
COL.COLO4_16884 Corchorus olitorius HOM05D007271 ORTHO05D009217 1.3e-39 168.7 131 72.5
TPR.G9088 Trifolium pratense HOM05D007271 ORTHO05D009217 6.3e-39 166.4 180 48.9
TPR.G9092 Trifolium pratense HOM05D007271 ORTHO05D009217 1.3e-23 115.5 97 56.7
Ca_22492_v3 Cicer arietinum L. HOM05D007271 ORTHO05D009217 1.0e-20 105.9 89 50.6
TPR.G34495 Trifolium pratense HOM05D007271 ORTHO05D009217 6.1e-18 96.7 107 45.8
QL12p000442 Quercus lobata HOM05D007271 ORTHO05D009217 7.0e-14 83.2 115 38.3
TPR.G8637 Trifolium pratense HOM05D007271 ORTHO05D009217 7.0e-14 83.2 71 53.5
PSO675G5865 Papaver somniferum HOM05D007271 ORTHO05D009217 1.2e-13 82.4 112 37.5
Oeu061072.1 Olea europaea HOM05D007271 ORTHO05D009217 3.8e-12 77.4 78 51.3
arahy.Tifrunner.gnm1.ann1.RGNF9W Arachis hypogaea HOM05D007271 ORTHO05D009217 4.7e-10 70.5 101 35.6
arahy.Tifrunner.gnm1.ann1.WVYD0V Arachis hypogaea HOM05D007271 ORTHO05D009217 4.7e-10 70.5 101 35.6
ATR0829G132 Amborella trichopoda HOM05D007271 ORTHO05D009217 1.4e-09 68.9 84 41.7


User provided reference genes

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