Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 3.2e-101 371.7 180 100.0
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.6e-97 359.4 180 95.6
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.1e-96 356.7 180 95.6
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.3e-94 349.7 179 92.2
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 2.2e-94 349.0 180 93.3
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 8.4e-94 347.1 180 92.2
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 5.4e-93 344.4 180 89.4
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 1.6e-92 342.8 180 89.4
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 3.5e-92 341.7 180 90.0
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 4.6e-92 341.3 180 88.9
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 4.6e-92 341.3 180 88.9
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 6.0e-92 340.9 180 89.4
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 7.9e-92 340.5 180 90.6
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 1.8e-91 339.3 180 89.4
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 2.3e-91 339.0 180 88.3
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 3.0e-91 338.6 180 87.8
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 3.9e-91 338.2 180 88.9
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 5.1e-91 337.8 180 89.4
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 6.7e-91 337.4 180 88.3
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 6.7e-91 337.4 180 88.3
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 8.7e-91 337.0 180 87.8
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 1.9e-90 335.9 180 88.9
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.9e-90 335.9 180 87.8
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 5.6e-90 334.3 180 85.6
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 5.6e-90 334.3 180 85.6
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 85.0
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 85.0
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 9.6e-90 333.6 180 87.2
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 87.8
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 85.0
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 85.6
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 85.0
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 4.8e-89 331.3 180 84.4
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 85.0
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 86.1
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 86.1
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 83.9
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 83.3
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 6.9e-88 327.4 181 84.5
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 85.0
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 85.0
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 84.4
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 84.4
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 83.3
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 82.8
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 4.5e-87 324.7 180 83.9
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 4.5e-87 324.7 180 83.9
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 5.8e-87 324.3 181 84.0
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 83.9
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 7.6e-87 323.9 180 83.9
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 82.2
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 1.3e-86 323.2 180 84.4
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 83.9
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.3
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 82.8
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.3
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 82.2
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 82.2
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 83.3
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 80.6
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 82.8
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 81.7
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 81.7
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 80.6
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 9.3e-85 317.0 199 75.4
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 80.6
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 80.6
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 6.0e-84 314.3 181 82.3
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.3e-83 313.2 180 82.2
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 3.0e-83 312.0 180 78.3
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 4.8e-81 304.7 180 81.7
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 6.2e-81 304.3 165 84.8
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 1.4e-80 303.1 203 71.9
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 2.4e-80 302.4 187 75.4
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.5e-79 299.7 206 71.4
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 7.6e-79 297.4 160 86.9
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 4.9e-78 294.7 159 84.9
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 4.2e-77 291.6 180 77.2
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 5.5e-77 291.2 159 86.2
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 5.5e-77 291.2 174 79.3
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 3.5e-76 288.5 161 82.0
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.0e-75 287.0 175 77.7
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 1.8e-75 286.2 160 81.9
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 4.3e-74 281.6 177 71.8
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 7.4e-74 280.8 177 72.3
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.3e-73 280.0 180 73.3
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 3.7e-73 278.5 172 79.7
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.1e-72 276.9 160 78.1
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.4e-72 276.6 156 80.1
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.4e-72 275.8 162 78.4
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 4.1e-72 275.0 167 77.8
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 3.4e-71 271.9 139 91.4
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 1.7e-70 269.6 164 76.2
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 3.8e-70 268.5 218 65.6
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 4.6e-68 261.5 153 79.7
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 7.9e-68 260.8 175 67.4
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.6e-65 253.1 175 65.1
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 4.8e-65 251.5 139 80.6
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 2.5e-61 239.2 171 62.6
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 7.9e-60 234.2 181 65.7
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 3.8e-54 215.3 114 82.5
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 1.0e-51 207.2 121 76.9
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.4e-51 206.8 174 52.3
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 7.4e-50 201.1 117 75.2
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-46 189.9 185 56.2
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-46 189.9 185 56.2
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 2.2e-46 189.5 146 62.3
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 6.3e-41 171.4 93 82.8
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 2.7e-39 166.0 115 72.2
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 1.5e-37 160.2 174 43.7
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 3.2e-37 159.1 96 76.0
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 1.6e-36 156.8 174 42.0
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 1.0e-35 154.1 91 78.0
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 8.8e-35 151.0 116 60.3
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.3e-33 147.1 177 45.2
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.8e-30 135.6 80 78.8
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 8.3e-25 117.9 99 60.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.5e-23 112.5 71 64.8
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.6e-22 107.8 65 76.9
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 1.9e-21 106.7 100 60.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 5.2e-19 98.6 56 89.3
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 2.0e-18 96.7 56 78.6
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 2.9e-17 92.8 50 86.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 7.0e-16 88.2 46 84.8
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 9.2e-08 61.2 45 68.9
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 3.5e-07 59.3 57 52.6


User provided reference genes

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