Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 1.8e-50 202.2 97 100.0
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 2.2e-48 195.3 97 95.9
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 1.2e-46 189.5 97 90.7
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 6.0e-46 187.2 97 88.7
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 1.0e-45 186.4 96 89.6
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 1.3e-45 186.0 97 90.7
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 3.0e-45 184.9 96 91.7
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 3.0e-45 184.9 96 91.7
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 8.6e-45 183.3 95 89.5
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 1.1e-44 183.0 97 86.6
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 88.7
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 88.7
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 1.9e-44 182.2 97 88.7
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 1.9e-44 182.2 93 91.4
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 3.3e-44 181.4 97 86.6
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 7.3e-44 180.3 97 87.6
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 7.3e-44 180.3 97 86.6
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 7.3e-44 180.3 97 87.6
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 9.6e-44 179.9 93 88.2
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 9.6e-44 179.9 96 90.6
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 9.6e-44 179.9 97 86.6
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 9.6e-44 179.9 97 86.6
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 1.2e-43 179.5 96 87.5
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 1.2e-43 179.5 93 88.2
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 1.2e-43 179.5 93 88.2
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 1.6e-43 179.1 97 88.7
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 1.6e-43 179.1 97 88.7
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 1.6e-43 179.1 93 88.2
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 1.6e-43 179.1 93 88.2
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.6e-43 179.1 93 87.1
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 2.1e-43 178.7 96 86.5
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 2.1e-43 178.7 97 86.6
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 3.6e-43 177.9 93 87.1
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 3.6e-43 177.9 97 84.5
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 3.6e-43 177.9 93 87.1
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 4.7e-43 177.6 97 84.5
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 4.7e-43 177.6 94 88.3
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 4.7e-43 177.6 93 87.1
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 8.1e-43 176.8 97 84.5
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 1.4e-42 176.0 97 83.5
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 1.4e-42 176.0 96 84.4
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 1.8e-42 175.6 93 86.0
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 1.8e-42 175.6 93 86.0
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 2.4e-42 175.3 96 83.3
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 2.4e-42 175.3 96 84.4
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 3.1e-42 174.9 97 83.5
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 3.1e-42 174.9 94 84.0
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 3.1e-42 174.9 97 84.5
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 4.0e-42 174.5 97 84.5
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 5.2e-42 174.1 97 84.5
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 85.4
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 6.9e-42 173.7 97 82.5
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 6.9e-42 173.7 97 82.5
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 81.2
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 81.2
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 81.2
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 81.2
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 6.9e-42 173.7 97 82.5
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 6.9e-42 173.7 97 82.5
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 6.9e-42 173.7 97 82.5
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 6.9e-42 173.7 97 82.5
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 6.9e-42 173.7 97 82.5
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 6.9e-42 173.7 93 83.9
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 81.2
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 6.9e-42 173.7 96 83.3
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 6.9e-42 173.7 95 84.2
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 9.0e-42 173.3 93 83.9
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 9.0e-42 173.3 96 83.3
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 9.0e-42 173.3 97 83.5
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 9.0e-42 173.3 98 83.7
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 1.2e-41 172.9 96 80.2
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 1.5e-41 172.6 96 82.3
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 1.5e-41 172.6 96 80.2
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 2.0e-41 172.2 96 81.2
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 2.0e-41 172.2 96 82.3
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 3.4e-41 171.4 97 81.4
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 3.4e-41 171.4 97 82.5
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 4.4e-41 171.0 97 81.4
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 5.8e-41 170.6 96 81.2
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 5.8e-41 170.6 93 81.7
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 5.8e-41 170.6 97 79.4
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 5.8e-41 170.6 97 83.5
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 1.7e-40 169.1 97 79.4
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 2.2e-40 168.7 97 82.5
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 2.9e-40 168.3 97 80.4
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 2.9e-40 168.3 97 80.4
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 3.8e-40 167.9 96 81.2
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 4.9e-40 167.5 93 82.8
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 4.9e-40 167.5 93 82.8
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 6.4e-40 167.2 93 82.8
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 8.4e-40 166.8 96 77.1
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 1.1e-39 166.4 97 77.3
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 1.9e-39 165.6 93 82.8
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 1.9e-39 165.6 93 81.7
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 1.9e-39 165.6 97 80.4
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 2.4e-39 165.2 97 77.3
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.4e-39 164.1 97 78.4
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 5.4e-39 164.1 96 77.1
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 1.2e-38 162.9 112 73.2
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 1.0e-37 159.8 97 78.4
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 2.3e-37 158.7 92 77.2
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 2.3e-37 158.7 115 68.7
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 3.9e-37 157.9 130 62.3
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 1.1e-36 156.4 93 81.7
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 3.3e-36 154.8 120 65.8
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 3.3e-36 154.8 120 65.8
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 3.3e-36 154.8 120 65.8
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 5.6e-36 154.1 95 74.7
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 5.6e-36 154.1 95 74.7
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 7.3e-36 153.7 97 74.2
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 9.6e-36 153.3 84 85.7
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 2.8e-35 151.8 140 57.9
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 2.8e-35 151.8 140 57.9
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 1.2e-33 146.4 97 76.3
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 1.8e-29 132.5 73 84.9
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 7.9e-22 107.1 93 50.5
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 1.1e-20 103.2 93 50.5
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 8.2e-19 97.1 97 56.7
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 1.8e-18 95.9 50 84.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 1.8e-18 95.9 50 84.0
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 2.6e-17 92.0 54 79.6
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 3.4e-17 91.7 49 85.7
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 1.0e-16 90.1 50 78.0
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 1.2e-14 83.2 59 64.4
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 2.5e-12 75.5 39 87.2
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 2.4e-10 68.9 41 80.5
TAR627G1128 Trochodendron aralioides HOM05D006309 ORTHO05D007937 9.3e-07 57.0 38 73.7


User provided reference genes

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