Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 1.2e-112 409.8 200 100.0
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 4.3e-91 338.2 200 84.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.4e-89 332.4 200 84.5
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 3.1e-89 332.0 200 81.5
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.2e-88 330.1 200 83.5
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.5e-88 329.7 200 84.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 2.5e-83 312.4 200 76.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 8.2e-74 280.8 202 70.8
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.1e-73 278.9 202 70.3
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.1e-69 266.2 202 68.3
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 3.6e-69 265.4 198 67.7
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.8e-68 260.8 203 67.0
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 4.4e-67 258.5 202 64.9
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 6.3e-66 254.6 202 65.3
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 8.2e-66 254.2 207 65.7
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.4e-65 253.4 202 66.3
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 7.0e-65 251.1 206 64.6
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 9.1e-65 250.8 205 65.4
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 9.1e-65 250.8 202 62.4
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.6e-64 250.0 207 66.2
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 3.5e-64 248.8 204 62.3
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.0e-63 247.3 200 65.5
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-63 246.5 201 62.7
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.2e-63 246.1 201 62.7
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.2e-63 246.1 201 62.7
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.9e-63 245.7 201 62.2
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 3.8e-63 245.4 199 63.8
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.2e-62 242.3 201 61.7
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 5.5e-62 241.5 201 66.2
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.2e-61 240.4 200 65.0
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 2.1e-61 239.6 200 62.0
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 2.7e-61 239.2 208 60.6
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.7e-61 239.2 203 60.1
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.0e-60 237.3 202 59.9
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.2e-60 235.0 203 63.5
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 8.8e-60 234.2 204 61.8
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.2e-59 233.8 207 61.8
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.5e-59 233.4 202 61.9
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.5e-59 233.4 204 57.8
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.2e-58 229.6 199 63.3
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.2e-58 229.6 199 63.3
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.8e-58 228.4 205 56.6
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.3e-58 228.0 200 61.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.4e-57 226.9 204 58.3
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.4e-57 226.9 198 61.1
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 5.3e-57 224.9 217 58.1
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.0e-56 223.0 202 56.4
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.0e-55 220.7 205 59.5
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.3e-55 220.3 206 53.9
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.8e-55 218.8 187 58.8
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.1e-54 217.2 202 54.5
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.5e-54 216.9 205 54.6
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 7.2e-54 214.5 202 58.9
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 7.2e-54 214.5 198 56.6
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.1e-53 213.0 202 55.9
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.7e-53 212.6 217 54.4
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-52 209.9 204 54.9
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.8e-52 209.9 204 54.9
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 2.3e-52 209.5 199 57.3
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.3e-52 209.5 204 52.5
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.3e-52 209.5 204 56.4
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 3.0e-52 209.1 206 52.4
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 4.0e-52 208.8 204 53.4
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 4.0e-52 208.8 208 54.8
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.0e-52 208.8 208 55.8
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.0e-52 208.8 205 52.2
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.0e-52 208.8 204 53.4
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 5.2e-52 208.4 205 54.1
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 5.2e-52 208.4 205 54.1
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 5.2e-52 208.4 202 57.4
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.2e-51 207.2 203 54.2
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-51 207.2 204 54.4
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 2.6e-51 206.1 201 53.7
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 3.4e-51 205.7 208 56.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 7.5e-51 204.5 206 54.4
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 9.8e-51 204.1 271 46.9
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.3e-50 203.8 201 54.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.7e-50 203.4 201 56.7
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.7e-50 203.4 202 55.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.7e-50 203.4 201 51.7
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.7e-50 203.4 211 54.0
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.2e-50 203.0 203 55.7
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.2e-50 203.0 203 55.7
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.2e-50 203.0 203 55.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.2e-50 203.0 203 55.2
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 2.8e-50 202.6 205 57.6
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 4.8e-50 201.8 202 56.9
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 4.8e-50 201.8 207 54.6
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 6.3e-50 201.4 203 57.6
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.4e-49 200.3 204 51.0
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.4e-49 200.3 202 54.0
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.4e-49 200.3 203 56.7
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 2.4e-49 199.5 204 53.4
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 2.4e-49 199.5 204 53.4
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 2.4e-49 199.5 202 55.0
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.1e-49 199.1 203 56.7
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 3.1e-49 199.1 203 53.2
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 4.1e-49 198.7 208 53.8
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 4.1e-49 198.7 200 53.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 4.1e-49 198.7 200 53.5
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 5.4e-49 198.4 201 52.2
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 5.4e-49 198.4 201 52.2
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 5.4e-49 198.4 201 52.2
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 5.4e-49 198.4 202 54.0
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 9.1e-49 197.6 217 50.7
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.2e-48 197.2 205 54.6
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.2e-48 197.2 205 54.6
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.2e-48 197.2 203 52.7
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.7e-48 196.1 202 52.5
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.7e-48 196.1 204 55.9
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.5e-48 195.7 263 44.9
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 5.9e-48 194.9 200 54.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 7.7e-48 194.5 206 53.4
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.0e-47 194.1 202 50.5
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.7e-47 193.4 204 53.4
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 5.0e-47 191.8 205 53.7
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.1e-46 190.7 203 51.7
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 2.5e-46 189.5 205 49.3
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 3.3e-46 189.1 214 49.5
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 3.3e-46 189.1 330 40.0
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 9.5e-46 187.6 203 50.7
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.2e-45 187.2 201 49.3
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.6e-45 186.8 205 50.7
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 3.0e-44 182.6 154 61.0
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 4.0e-44 182.2 212 50.0
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 5.2e-44 181.8 216 48.6
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.3e-42 177.2 200 51.0
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-42 176.4 121 71.9
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.8e-41 173.3 162 55.6
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 7.0e-41 171.4 204 49.5
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.2e-40 170.6 204 48.5
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.0e-39 167.5 202 48.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.7e-39 166.8 204 46.1
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 5.0e-39 165.2 173 52.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.5e-38 163.7 199 46.2
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 1.9e-38 163.3 202 46.5
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.8e-37 159.5 189 49.7
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 6.8e-36 154.8 203 47.3
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 1.5e-35 153.7 199 47.2
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 5.8e-35 151.8 109 69.7
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 7.5e-35 151.4 178 50.0
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 9.2e-33 144.4 175 47.4
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.7e-32 142.9 204 43.1
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.5e-32 142.5 158 50.6
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.1e-30 137.5 141 54.6
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.4e-28 130.6 89 67.4
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 5.2e-28 128.6 159 47.8
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 5.2e-28 128.6 89 67.4
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 6.8e-28 128.3 89 65.2
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.7e-26 123.6 162 43.8
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 2.2e-26 123.2 89 66.3
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 2.9e-26 122.9 171 41.5
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 4.9e-26 122.1 143 48.3
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 6.4e-26 121.7 89 62.9
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 9.2e-25 117.9 157 43.9
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.9e-22 110.2 161 47.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.9e-18 96.3 73 69.9
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.1e-17 94.4 161 41.6
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 3.2e-17 92.8 95 51.6
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 9.2e-17 91.3 122 48.4
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 1.9e-14 83.6 202 35.1
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.6e-13 79.3 124 37.9
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 3.6e-13 79.3 54 66.7
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.6e-13 79.3 44 86.4
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.6e-13 79.3 44 86.4
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.8e-12 77.0 44 84.1
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 1.8e-12 77.0 103 41.7
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-11 73.9 90 45.6
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 2.6e-11 73.2 79 49.4
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 1.3e-10 70.9 52 59.6
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 2.2e-10 70.1 92 42.4
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 2.2e-10 70.1 92 42.4
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 3.2e-09 66.2 92 41.3
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 3.2e-09 66.2 92 41.3
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 4.6e-08 62.4 72 45.8
MELO3C003432.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.3e-07 60.1 103 41.7


User provided reference genes

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