Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G305000 Theobroma cacao HOM05D008014 ORTHO05D009981 3.7e-244 847.8 436 100.0
Thecc.03G304500 Theobroma cacao HOM05D008014 ORTHO05D009981 4.3e-160 568.5 541 61.9
Thecc.03G303400 Theobroma cacao HOM05D008014 ORTHO05D009981 4.8e-95 352.4 224 81.7
COL.COLO4_10755 Corchorus olitorius HOM05D008014 ORTHO05D009981 5.6e-67 259.2 181 74.6
Thecc.03G303700 Theobroma cacao HOM05D008014 ORTHO05D009981 4.4e-48 196.4 191 56.0
Thecc.03G303500 Theobroma cacao HOM05D008014 ORTHO05D009981 1.3e-47 194.9 231 46.8
COL.COLO4_10756 Corchorus olitorius HOM05D008014 ORTHO05D009981 4.9e-39 166.4 186 48.4
Thecc.03G303600 Theobroma cacao HOM05D024574 ORTHO05D016990 5.4e-38 162.9 185 55.1
COL.COLO4_17130 Corchorus olitorius HOM05D008014 ORTHO05D009981 1.3e-34 151.8 211 42.7
Duzib213G1088 Durio zibethinus HOM05D008014 ORTHO05D009981 8.1e-34 149.1 211 42.7
Gohir.D08G180600 Gossypium hirsutum HOM05D008014 ORTHO05D009981 1.1e-33 148.7 201 42.8
Gohir.A08G160100 Gossypium hirsutum HOM05D013541 ORTHO05D009981 3.1e-33 147.1 202 42.6
Gohir.A08G160200 Gossypium hirsutum HOM05D013541 ORTHO05D009981 3.1e-33 147.1 202 42.6
Gorai.004G189100 Gossypium raimondii HOM05D008014 ORTHO05D009981 4.0e-33 146.7 204 44.1
Gorai.004G189300 Gossypium raimondii HOM05D013541 ORTHO05D009981 9.0e-33 145.6 187 44.4
Gohir.D08G180500 Gossypium hirsutum HOM05D013541 ORTHO05D009981 1.5e-32 144.8 202 42.6
Duzib213G0359 Durio zibethinus HOM05D008014 ORTHO05D009981 2.2e-31 141.0 208 41.8
Duzib205G1694 Durio zibethinus HOM05D008014 ORTHO05D009981 2.4e-30 137.5 195 45.1
Thecc.07G106000 Theobroma cacao HOM05D008014 ORTHO05D009981 3.2e-30 137.1 189 44.4
Gohir.D01G043800 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.7e-29 134.0 182 42.9
Gorai.002G063000 Gossypium raimondii HOM05D008014 ORTHO05D009981 2.7e-29 134.0 182 42.9
Gohir.A01G057400 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.3e-28 131.0 182 43.4
Gohir.A04G040100 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.3e-28 131.0 183 41.0
Gorai.009G369600 Gossypium raimondii HOM05D008014 ORTHO05D009981 3.0e-28 130.6 183 40.4
Gohir.D05G343433 Gossypium hirsutum HOM05D008014 ORTHO05D009981 6.7e-28 129.4 183 42.1
Gorai.009G369100 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.1e-27 128.6 207 38.6
Thecc.07G105600 Theobroma cacao HOM05D008014 ORTHO05D009981 1.9e-27 127.9 184 40.8
Gohir.A04G040200 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.5e-27 127.5 185 40.5
Duzib187G1296 Durio zibethinus HOM05D008014 ORTHO05D009981 9.6e-27 125.6 245 35.5
Gohir.D05G342750 Gossypium hirsutum HOM05D008014 ORTHO05D009981 1.3e-26 125.2 206 37.9
Gohir.D05G342800 Gossypium hirsutum HOM05D008014 ORTHO05D009981 1.6e-26 124.8 206 37.4
Gorai.009G369400 Gossypium raimondii HOM05D008014 ORTHO05D009981 3.7e-26 123.6 206 37.4
Gohir.A01G057332 Gossypium hirsutum HOM05D008014 ORTHO05D009981 4.8e-26 123.2 185 40.5
Gohir.A01G057600 Gossypium hirsutum HOM05D008014 ORTHO05D009981 4.8e-26 123.2 218 38.1
Duzib187G0568 Durio zibethinus HOM05D008014 ORTHO05D009981 6.2e-26 122.9 184 38.0
Gohir.D13G153000 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.4e-25 120.9 181 39.8
COL.COLO4_30081 Corchorus olitorius HOM05D008014 ORTHO05D009981 5.3e-25 119.8 181 38.7
Gohir.D01G043732 Gossypium hirsutum HOM05D008014 ORTHO05D009981 5.3e-25 119.8 185 39.5
Gorai.002G062900 Gossypium raimondii HOM05D008014 ORTHO05D009981 5.3e-25 119.8 185 39.5
Gorai.009G371800 Gossypium raimondii HOM05D008014 ORTHO05D009981 5.3e-25 119.8 181 39.2
Duzib205G1943 Durio zibethinus HOM05D008014 ORTHO05D009981 9.0e-25 119.0 101 63.4
Gorai.004G189200 Gossypium raimondii HOM05D008014 ORTHO05D009981 9.0e-25 119.0 127 49.6
Gohir.D01G044000 Gossypium hirsutum HOM05D008014 ORTHO05D009981 1.2e-24 118.6 240 35.4
Gohir.D08G180550 Gossypium hirsutum HOM05D008014 ORTHO05D009981 1.2e-24 118.6 132 48.5
Gorai.002G063200 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.5e-24 118.2 240 35.4
Thecc.09G297200 Theobroma cacao HOM05D008014 ORTHO05D009981 2.0e-24 117.9 173 42.2
Gorai.013G172900 Gossypium raimondii HOM05D008014 ORTHO05D009981 5.8e-24 116.3 183 38.3
Gohir.A13G148400 Gossypium hirsutum HOM05D008014 ORTHO05D009981 7.6e-24 115.9 203 36.5
Gorai.009G369900 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.0e-23 115.5 183 39.3
Thecc.09G297300 Theobroma cacao HOM05D008014 ORTHO05D009981 1.3e-23 115.2 173 39.9
Thecc.09G297600 Theobroma cacao HOM05D008014 ORTHO05D009981 1.4e-22 111.7 190 37.9
Gohir.A04G040400 Gossypium hirsutum HOM05D008014 ORTHO05D009981 9.3e-22 109.0 183 38.8
Duzib170G0545 Durio zibethinus HOM05D008014 ORTHO05D009981 1.6e-21 108.2 186 36.0
Duzib205G1222 Durio zibethinus HOM05D008014 ORTHO05D009981 1.6e-21 108.2 443 27.3
Thecc.09G297500 Theobroma cacao HOM05D008014 ORTHO05D009981 3.5e-21 107.1 181 37.6
Duzib187G1128 Durio zibethinus HOM05D008014 ORTHO05D009981 4.6e-21 106.7 221 33.5
Duzib187G1720 Durio zibethinus HOM05D008014 ORTHO05D009981 4.6e-21 106.7 221 33.5
Duzib187G1989 Durio zibethinus HOM05D008014 ORTHO05D009981 4.6e-21 106.7 221 33.5
Gohir.D01G043900 Gossypium hirsutum HOM05D008014 ORTHO05D047837 1.1e-19 102.1 206 34.5
Gorai.002G063100 Gossypium raimondii HOM05D008014 ORTHO05D047837 1.1e-19 102.1 206 34.5
COL.COLO4_30083 Corchorus olitorius HOM05D008014 ORTHO05D009981 1.5e-19 101.7 143 38.5
Gohir.A01G057500 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.5e-19 100.9 206 34.0
Gorai.004G189400 Gossypium raimondii HOM05D008014 ORTHO05D009981 5.7e-19 99.8 182 35.7
Duzib168G0242 Durio zibethinus HOM05D008014 ORTHO05D009981 2.4e-17 94.4 205 34.6
Gohir.D08G180666 Gossypium hirsutum HOM05D010401 ORTHO05D012682 1.5e-16 91.7 186 31.7
Gorai.004G189500 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.5e-16 91.7 194 29.9
Thecc.04G233100 Theobroma cacao HOM05D021021 ORTHO05D022794 1.5e-16 91.7 156 35.9
Dinv20791 Davidia involucrata HOM05D000699 ORTHO05D000519 3.8e-15 87.0 186 30.6
Thecc.03G303900 Theobroma cacao HOM05D024574 ORTHO05D016990 1.6e-13 81.6 246 32.5
Duzib213G0842 Durio zibethinus HOM05D008014 ORTHO05D009981 3.9e-12 77.0 95 42.1
QL09p024013 Quercus lobata HOM05D008014 ORTHO05D010101 6.7e-12 76.3 165 30.3
COL.COLO4_29752 Corchorus olitorius HOM05D009011 ORTHO05D013312 1.9e-11 74.7 186 29.6
QL09p024465 Quercus lobata HOM05D000125 ORTHO05D010101 5.7e-11 73.2 161 30.4
Haze_19953 Corylus avellana HOM05D009378 ORTHO05D010101 1.6e-10 71.6 217 27.2
QL09p024027 Quercus lobata HOM05D009378 ORTHO05D010101 1.6e-10 71.6 202 28.2
vmacro16255 Vaccinium macrocarpon HOM05D000045 ORTHO05D002701 3.7e-10 70.5 198 28.8
Cfa013571 Carpinus fangiana HOM05D000125 ORTHO05D010101 8.2e-10 69.3 239 26.8
Cfa016894 Carpinus fangiana HOM05D000125 ORTHO05D010101 8.2e-10 69.3 236 26.3
TWI81G0642 Tripterygium wilfordii HOM05D000125 ORTHO05D010101 1.4e-09 68.6 216 27.3
COL.COLO4_29753 Corchorus olitorius HOM05D009011 ORTHO05D013312 4.1e-09 67.0 204 29.9
Cfa016027 Carpinus fangiana HOM05D009378 ORTHO05D010101 5.3e-09 66.6 195 26.7
COL.COLO4_29754 Corchorus olitorius HOM05D009011 ORTHO05D013312 5.3e-09 66.6 188 29.8
Haze_00511 Corylus avellana HOM05D009378 ORTHO05D010101 9.0e-09 65.9 157 28.7
Gohir.A11G320566 Gossypium hirsutum HOM05D009011 ORTHO05D009981 1.2e-08 65.5 153 31.4
Haze_13413 Corylus avellana HOM05D000125 ORTHO05D010101 1.5e-08 65.1 159 29.6
PGR031G1223 Punica granatum HOM05D009378 ORTHO05D010101 1.5e-08 65.1 169 26.6
CiPaw.06G031800 Carya illinoinensis HOM05D000125 ORTHO05D010101 2.6e-08 64.3 226 24.8
ClCG01G004310 Citrullus lanatus HOM05D024292 ORTHO05D010101 5.9e-08 63.2 133 30.1
Gohir.A11G320800 Gossypium hirsutum HOM05D009011 ORTHO05D036129 5.9e-08 63.2 125 29.6
COL.COLO4_29757 Corchorus olitorius HOM05D009011 ORTHO05D013312 7.7e-08 62.8 201 29.9
Sed0024411 Sechium edule HOM05D024292 ORTHO05D010101 1.3e-07 62.0 188 23.4
MELO3C005509.2 Cucumis melo HOM05D024292 ORTHO05D010101 2.2e-07 61.2 134 28.4
PGR031G1316 Punica granatum HOM05D000125 ORTHO05D010101 2.2e-07 61.2 203 25.6
CANSAT21G1400 Cannabis sativa HOM05D000125 ORTHO05D010101 3.8e-07 60.5 154 29.2
Haze_00427 Corylus avellana HOM05D000125 ORTHO05D010101 3.8e-07 60.5 142 27.5
Gohir.A05G086400 Gossypium hirsutum HOM05D041197 ORTHO05D036119 5.0e-07 60.1 182 27.5
Duzib106G1121 Durio zibethinus HOM05D009011 ORTHO05D013312 6.5e-07 59.7 161 28.0
Cfa007320 Carpinus fangiana HOM05D000125 ORTHO05D010101 1.9e-06 58.2 245 24.1
Haze_00406 Corylus avellana HOM05D000125 ORTHO05D010101 1.9e-06 58.2 134 28.4
Cpa.g.sc623.3 Carica papaya HOM05D009378 ORTHO05D010101 3.2e-06 57.4 139 26.6
Haze_00404 Corylus avellana HOM05D000125 ORTHO05D010101 3.2e-06 57.4 184 25.5
QL05p062837 Quercus lobata HOM05D009378 ORTHO05D010101 3.2e-06 57.4 156 30.1
Gohir.D06G093000 Gossypium hirsutum HOM05D009011 ORTHO05D013312 4.2e-06 57.0 145 31.0
Gohir.D11G339400 Gossypium hirsutum HOM05D009011 ORTHO05D013312 4.2e-06 57.0 126 31.7
Gohir.A03G167000 Gossypium hirsutum HOM05D009011 ORTHO05D019097 5.5e-06 56.6 124 31.5
QL09p028133 Quercus lobata HOM05D009378 ORTHO05D010101 7.2e-06 56.2 313 23.0
Gohir.1Z049657 Gossypium hirsutum HOM05D009011 ORTHO05D013312 9.4e-06 55.8 129 31.8
Gohir.A06G093401 Gossypium hirsutum HOM05D009011 ORTHO05D013312 9.4e-06 55.8 129 31.8


User provided reference genes

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