Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 2.6e-33 144.8 74 100.0
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 2.1e-30 135.2 74 94.6
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.8e-24 114.4 67 89.6
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.9e-24 114.0 67 89.6
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.4e-23 112.5 67 82.1
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.2e-23 111.3 67 88.1
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.8e-18 95.5 60 78.3
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 2.2e-16 88.6 68 64.7
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.4e-15 85.1 72 62.5
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 4.2e-15 84.3 67 68.7
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 1.8e-13 79.0 72 58.3
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 3.9e-13 77.8 67 67.2
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 6.7e-13 77.0 53 69.8
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 6.7e-13 77.0 67 64.2
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.1e-12 76.3 59 67.8
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.1e-12 76.3 76 56.6
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.5e-12 75.9 60 70.0
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 1.5e-12 75.9 63 60.3
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.5e-12 75.1 73 56.2
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 2.5e-12 75.1 61 65.6
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 2.5e-12 75.1 54 68.5
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.3e-12 74.7 71 54.9
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 3.3e-12 74.7 48 75.0
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.3e-12 74.3 63 57.1
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.3e-12 74.3 72 54.2
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.3e-12 74.3 72 54.2
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 7.4e-12 73.6 72 52.8
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 7.4e-12 73.6 76 56.6
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.6e-11 72.4 79 51.9
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.6e-11 72.4 79 51.9
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 1.6e-11 72.4 71 53.5
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.6e-11 72.4 60 56.7
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 2.1e-11 72.0 69 53.6
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.8e-11 71.6 51 66.7
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.7e-11 71.2 51 66.7
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.7e-11 71.2 71 53.5
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 3.7e-11 71.2 62 58.1
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.8e-11 70.9 79 51.9
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 4.8e-11 70.9 62 62.9
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.1e-10 69.7 62 58.1
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 1.1e-10 69.7 56 69.6
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.1e-10 69.7 63 60.3
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.4e-10 69.3 66 53.0
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.4e-10 69.3 66 53.0
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.4e-10 69.3 53 62.3
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.8e-10 68.9 54 63.0
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.8e-10 68.9 60 58.3
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.8e-10 68.9 56 60.7
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.8e-10 68.9 59 61.0
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 2.4e-10 68.6 72 50.0
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 2.4e-10 68.6 45 75.6
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.4e-10 68.6 59 59.3
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.1e-10 68.2 65 53.8
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.1e-10 68.2 67 52.2
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 3.1e-10 68.2 64 54.7
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.1e-10 68.2 61 57.4
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 4.0e-10 67.8 56 60.7
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.0e-10 67.8 65 53.8
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.0e-10 67.8 69 56.5
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 4.0e-10 67.8 66 54.5
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.0e-10 67.8 51 62.7
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.0e-10 67.8 54 61.1
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.0e-10 67.8 63 54.0
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 4.0e-10 67.8 71 54.9
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 5.3e-10 67.4 61 57.4
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 6.9e-10 67.0 67 53.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.9e-10 67.0 54 61.1
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 9.0e-10 66.6 48 66.7
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 9.0e-10 66.6 66 51.5
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 9.0e-10 66.6 71 49.3
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 9.0e-10 66.6 66 50.0
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 9.0e-10 66.6 57 57.9
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 9.0e-10 66.6 54 61.1
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.2e-09 66.2 70 47.1
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.2e-09 66.2 70 47.1
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.2e-09 66.2 70 47.1
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.2e-09 66.2 70 47.1
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.2e-09 66.2 70 47.1
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.2e-09 66.2 64 56.2
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.2e-09 66.2 61 54.1
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.5e-09 65.9 54 61.1
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.5e-09 65.9 61 57.4
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 1.5e-09 65.9 45 68.9
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.5e-09 65.9 64 48.4
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.5e-09 65.9 67 52.2
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.5e-09 65.9 52 57.7
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 2.0e-09 65.5 58 53.4
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.0e-09 65.5 69 47.8
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.0e-09 65.5 59 55.9
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.0e-09 65.5 54 61.1
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 2.0e-09 65.5 54 63.0
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.6e-09 65.1 54 59.3
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.6e-09 65.1 54 59.3
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 3.4e-09 64.7 70 45.7
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.4e-09 64.7 57 56.1
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.4e-09 64.7 57 56.1
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.4e-09 64.7 59 54.2
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 4.5e-09 64.3 51 58.8
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 4.5e-09 64.3 59 50.8
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 5.8e-09 63.9 61 57.4
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.8e-09 63.9 57 57.9
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 5.8e-09 63.9 58 51.7
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 5.8e-09 63.9 61 54.1
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 5.8e-09 63.9 67 50.7
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 5.8e-09 63.9 61 55.7
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.6e-09 63.5 54 57.4
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 7.6e-09 63.5 57 56.1
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 7.6e-09 63.5 56 57.1
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.0e-08 63.2 68 51.5
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.0e-08 63.2 56 57.1
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.0e-08 63.2 56 57.1
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.0e-08 63.2 68 50.0
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.0e-08 63.2 61 52.5
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 1.0e-08 63.2 57 56.1
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.3e-08 62.8 58 55.2
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 1.3e-08 62.8 46 63.0
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 1.3e-08 62.8 46 63.0
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-08 62.4 79 46.8
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-08 62.4 58 53.4
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 1.7e-08 62.4 58 53.4
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 1.7e-08 62.4 58 53.4
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.7e-08 62.4 55 56.4
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 2.9e-08 61.6 69 47.8
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 2.9e-08 61.6 69 47.8
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 3.8e-08 61.2 60 53.3
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 3.8e-08 61.2 45 64.4
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 4.9e-08 60.8 64 51.6
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 6.5e-08 60.5 67 47.8
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.5e-08 60.5 56 51.8
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 8.4e-08 60.1 67 44.8
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 8.4e-08 60.1 79 45.6
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 8.4e-08 60.1 62 48.4
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 8.4e-08 60.1 44 63.6
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 8.4e-08 60.1 43 62.8
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 8.4e-08 60.1 44 59.1
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 8.4e-08 60.1 59 52.5
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 8.4e-08 60.1 59 52.5
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 8.4e-08 60.1 59 52.5
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.4e-07 59.3 54 53.7
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 1.9e-07 58.9 65 49.2
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.9e-07 58.9 59 52.5
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.9e-07 58.9 59 50.8
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.9e-07 58.9 48 60.4
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 2.5e-07 58.5 63 50.8
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 2.5e-07 58.5 63 50.8
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 2.5e-07 58.5 63 50.8
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 2.5e-07 58.5 63 50.8
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 2.5e-07 58.5 59 49.2
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 2.5e-07 58.5 70 45.7
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.2e-07 58.2 53 52.8
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 3.2e-07 58.2 68 45.6
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.2e-07 58.2 56 51.8
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 3.2e-07 58.2 46 56.5
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 3.2e-07 58.2 54 51.9
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 4.2e-07 57.8 64 50.0
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 4.2e-07 57.8 64 50.0
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 4.2e-07 57.8 59 52.5
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 5.5e-07 57.4 63 47.6
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 5.5e-07 57.4 69 49.3
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 5.5e-07 57.4 44 68.2
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 5.5e-07 57.4 53 52.8
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 5.5e-07 57.4 62 48.4
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 9.3e-07 56.6 51 56.9
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 9.3e-07 56.6 44 61.4
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 9.3e-07 56.6 67 53.7
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.2e-06 56.2 54 46.3
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.2e-06 56.2 68 50.0
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 1.2e-06 56.2 37 67.6
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 2.7e-06 55.1 54 53.7
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 2.7e-06 55.1 47 57.4
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 2.7e-06 55.1 47 57.4
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 2.7e-06 55.1 56 51.8
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.7e-06 55.1 72 44.4
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.7e-06 55.1 72 44.4
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 3.5e-06 54.7 46 58.7
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 3.5e-06 54.7 46 58.7
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 3.5e-06 54.7 64 48.4
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 3.5e-06 54.7 49 59.2
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 3.5e-06 54.7 41 63.4
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.6e-06 54.3 72 44.4
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 6.0e-06 53.9 49 57.1
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 6.0e-06 53.9 51 51.0
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.0e-06 53.9 59 50.8
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.0e-06 53.9 59 50.8
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 6.0e-06 53.9 48 58.3
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 7.9e-06 53.5 48 52.1
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 7.9e-06 53.5 59 49.2
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 7.9e-06 53.5 59 49.2


User provided reference genes

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