Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G303500 Theobroma cacao HOM05D008014 ORTHO05D009981 0.0e+00 1246.5 629 100.0
Thecc.03G303800 Theobroma cacao HOM05D008014 ORTHO05D009981 1.9e-156 557.0 378 77.8
Thecc.03G303400 Theobroma cacao HOM05D008014 ORTHO05D009981 4.9e-56 223.4 257 47.5
Thecc.03G303700 Theobroma cacao HOM05D008014 ORTHO05D009981 1.3e-53 215.3 196 58.2
Thecc.03G304500 Theobroma cacao HOM05D008014 ORTHO05D009981 3.2e-47 194.1 231 46.8
Thecc.03G305000 Theobroma cacao HOM05D008014 ORTHO05D009981 3.2e-47 194.1 231 46.8
COL.COLO4_10756 Corchorus olitorius HOM05D008014 ORTHO05D009981 5.4e-47 193.4 187 53.5
COL.COLO4_10755 Corchorus olitorius HOM05D008014 ORTHO05D009981 9.2e-47 192.6 186 56.5
COL.COLO4_17130 Corchorus olitorius HOM05D008014 ORTHO05D009981 1.6e-35 155.2 198 45.5
Duzib205G1694 Durio zibethinus HOM05D008014 ORTHO05D009981 2.7e-30 137.9 182 44.0
Gorai.004G189300 Gossypium raimondii HOM05D013541 ORTHO05D009981 4.6e-30 137.1 203 41.9
Gohir.D08G180500 Gossypium hirsutum HOM05D013541 ORTHO05D009981 1.0e-29 136.0 201 42.8
Gorai.004G189100 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.3e-29 135.6 201 42.8
Gohir.A04G040200 Gossypium hirsutum HOM05D008014 ORTHO05D009981 3.9e-29 134.0 206 38.8
Gohir.A08G160100 Gossypium hirsutum HOM05D013541 ORTHO05D009981 5.1e-29 133.7 201 41.8
Gohir.A08G160200 Gossypium hirsutum HOM05D013541 ORTHO05D009981 5.1e-29 133.7 201 41.8
Gorai.009G369600 Gossypium raimondii HOM05D008014 ORTHO05D009981 5.1e-29 133.7 194 40.2
Gohir.A04G040100 Gossypium hirsutum HOM05D008014 ORTHO05D009981 8.7e-29 132.9 194 39.7
Duzib213G0359 Durio zibethinus HOM05D008014 ORTHO05D009981 1.1e-28 132.5 194 43.3
Gohir.D05G343433 Gossypium hirsutum HOM05D008014 ORTHO05D009981 1.5e-28 132.1 194 40.7
Gohir.D08G180600 Gossypium hirsutum HOM05D008014 ORTHO05D009981 1.9e-28 131.7 201 41.8
Gohir.D08G180550 Gossypium hirsutum HOM05D008014 ORTHO05D009981 5.6e-28 130.2 134 53.0
Gorai.004G189200 Gossypium raimondii HOM05D008014 ORTHO05D009981 2.8e-27 127.9 127 53.5
Duzib205G1222 Durio zibethinus HOM05D008014 ORTHO05D009981 8.1e-27 126.3 230 38.3
Thecc.07G106000 Theobroma cacao HOM05D008014 ORTHO05D009981 1.1e-26 125.9 204 40.2
Gorai.009G369100 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.8e-26 125.2 212 36.3
Gorai.009G371800 Gossypium raimondii HOM05D008014 ORTHO05D009981 2.4e-26 124.8 189 39.7
Gohir.D05G342750 Gossypium hirsutum HOM05D008014 ORTHO05D009981 5.3e-26 123.6 208 36.5
Gohir.A01G057400 Gossypium hirsutum HOM05D008014 ORTHO05D009981 6.9e-26 123.2 225 37.8
Gohir.D01G043800 Gossypium hirsutum HOM05D008014 ORTHO05D009981 5.8e-25 120.2 224 35.3
Gorai.002G063000 Gossypium raimondii HOM05D008014 ORTHO05D009981 5.8e-25 120.2 224 35.3
Gohir.D05G342800 Gossypium hirsutum HOM05D008014 ORTHO05D009981 7.6e-25 119.8 208 35.1
Gorai.009G369400 Gossypium raimondii HOM05D008014 ORTHO05D009981 4.9e-24 117.1 208 34.6
Duzib213G1088 Durio zibethinus HOM05D008014 ORTHO05D009981 8.4e-24 116.3 222 36.5
Gorai.009G369900 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.9e-23 115.2 209 37.3
Thecc.07G105600 Theobroma cacao HOM05D008014 ORTHO05D009981 1.9e-23 115.2 245 34.7
Gohir.D01G044000 Gossypium hirsutum HOM05D008014 ORTHO05D009981 1.6e-22 112.1 221 34.8
Gohir.A01G057332 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.1e-22 111.7 192 35.9
Gorai.002G063200 Gossypium raimondii HOM05D008014 ORTHO05D009981 2.1e-22 111.7 221 34.8
Gohir.A01G057600 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.7e-22 111.3 222 35.1
Thecc.09G297600 Theobroma cacao HOM05D008014 ORTHO05D009981 3.5e-22 110.9 200 35.0
Duzib170G0545 Durio zibethinus HOM05D008014 ORTHO05D009981 4.6e-22 110.5 173 40.5
Thecc.09G297200 Theobroma cacao HOM05D008014 ORTHO05D009981 7.9e-22 109.8 202 38.1
Thecc.09G297300 Theobroma cacao HOM05D008014 ORTHO05D009981 7.9e-22 109.8 211 36.5
Gohir.A04G040400 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.3e-21 108.2 212 34.0
Gohir.D01G043732 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.3e-21 108.2 192 34.9
Gorai.002G062900 Gossypium raimondii HOM05D008014 ORTHO05D009981 2.3e-21 108.2 192 34.9
Duzib187G1296 Durio zibethinus HOM05D008014 ORTHO05D009981 6.7e-21 106.7 198 34.8
COL.COLO4_30081 Corchorus olitorius HOM05D008014 ORTHO05D009981 1.9e-20 105.1 193 38.3
Duzib187G0568 Durio zibethinus HOM05D008014 ORTHO05D009981 1.6e-19 102.1 193 35.2
Thecc.09G297500 Theobroma cacao HOM05D008014 ORTHO05D009981 2.1e-19 101.7 190 38.4
Gohir.D13G153000 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.8e-19 101.3 193 37.8
Gohir.A13G148400 Gossypium hirsutum HOM05D008014 ORTHO05D009981 4.8e-19 100.5 193 35.8
QL02p088210 Quercus lobata HOM05D000003 ORTHO05D000004 8.2e-19 99.8 118 39.8
Duzib187G1128 Durio zibethinus HOM05D008014 ORTHO05D009981 1.4e-18 99.0 196 36.2
Duzib187G1720 Durio zibethinus HOM05D008014 ORTHO05D009981 1.4e-18 99.0 196 36.2
Duzib187G1989 Durio zibethinus HOM05D008014 ORTHO05D009981 1.4e-18 99.0 196 36.2
COL.COLO4_30083 Corchorus olitorius HOM05D008014 ORTHO05D009981 2.4e-18 98.2 147 40.1
Gorai.013G172900 Gossypium raimondii HOM05D008014 ORTHO05D009981 3.1e-18 97.8 193 37.3
QL12p038026 Quercus lobata HOM05D022054 ORTHO05D000006 1.2e-17 95.9 196 29.1
Gohir.A01G057500 Gossypium hirsutum HOM05D008014 ORTHO05D009981 2.6e-17 94.7 226 33.2
Gohir.D01G043900 Gossypium hirsutum HOM05D008014 ORTHO05D047837 5.8e-17 93.6 227 33.0
Gorai.002G063100 Gossypium raimondii HOM05D008014 ORTHO05D047837 5.8e-17 93.6 227 33.0
Gohir.D08G180666 Gossypium hirsutum HOM05D010401 ORTHO05D012682 1.7e-16 92.0 219 32.0
Duzib168G0242 Durio zibethinus HOM05D008014 ORTHO05D009981 2.9e-16 91.3 205 33.2
Thecc.04G233100 Theobroma cacao HOM05D021021 ORTHO05D022794 1.9e-15 88.6 163 36.2
Gorai.004G189400 Gossypium raimondii HOM05D008014 ORTHO05D009981 5.5e-15 87.0 200 32.0
Duzib205G1943 Durio zibethinus HOM05D008014 ORTHO05D009981 2.7e-14 84.7 89 48.3
PSO782G4259 Papaver somniferum HOM05D000003 ORTHO05D000006 2.7e-14 84.7 137 28.5
Dinv20791 Davidia involucrata HOM05D000699 ORTHO05D000519 1.3e-13 82.4 192 31.8
COL.COLO4_35111 Corchorus olitorius HOM05D012200 ORTHO05D011948 5.1e-13 80.5 104 38.5
QL01p027762 Quercus lobata HOM05D000003 ORTHO05D000006 5.1e-13 80.5 96 42.7
QL01p027824 Quercus lobata HOM05D000003 ORTHO05D000006 5.1e-13 80.5 96 42.7
QL01p018515 Quercus lobata HOM05D000003 ORTHO05D011616 6.7e-13 80.1 96 42.7
Duzib192G0668 Durio zibethinus HOM05D000003 ORTHO05D000006 1.1e-12 79.3 99 38.4
Gorai.004G189500 Gossypium raimondii HOM05D008014 ORTHO05D009981 1.5e-12 79.0 190 28.4
PGR142G1125 Punica granatum HOM05D000003 ORTHO05D000006 2.5e-12 78.2 126 29.4
Duzib213G0842 Durio zibethinus HOM05D008014 ORTHO05D009981 3.3e-12 77.8 180 29.4
Duzib187G0609 Durio zibethinus HOM05D000003 ORTHO05D000004 4.3e-12 77.4 99 38.4
QL10p006121 Quercus lobata HOM05D008014 ORTHO05D011616 4.3e-12 77.4 97 36.1
COL.COLO4_13796 Corchorus olitorius HOM05D000003 ORTHO05D000007 9.7e-12 76.3 94 36.2
QL93p1865_0150 Quercus lobata HOM05D000003 ORTHO05D000007 1.3e-11 75.9 146 27.4
COL.COLO4_29745 Corchorus olitorius HOM05D009011 ORTHO05D013312 3.7e-11 74.3 207 30.9
QL10p050539 Quercus lobata HOM05D000003 ORTHO05D000006 8.2e-11 73.2 85 41.2
QL04p091860 Quercus lobata HOM05D000003 ORTHO05D044761 1.8e-10 72.0 86 36.0
QL05p048212 Quercus lobata HOM05D008014 ORTHO05D011616 3.1e-10 71.2 72 45.8
QL04p038160 Quercus lobata HOM05D000003 ORTHO05D000007 5.3e-10 70.5 138 31.9
QL09p014965 Quercus lobata HOM05D000003 ORTHO05D000007 5.3e-10 70.5 77 44.2
SGA_v2.0_scaffold245G44786 Striga asiatica HOM05D008014 ORTHO05D016193 5.3e-10 70.5 127 32.3
TWI81G0642 Tripterygium wilfordii HOM05D000125 ORTHO05D010101 9.0e-10 69.7 195 29.2
Gohir.A11G320800 Gossypium hirsutum HOM05D009011 ORTHO05D036129 1.2e-09 69.3 135 28.1
COL.COLO4_20496 Corchorus olitorius HOM05D012200 ORTHO05D011948 1.5e-09 68.9 103 36.9
QL11p054864 Quercus lobata HOM05D000003 ORTHO05D000007 1.5e-09 68.9 154 31.8
COL.COLO4_12291 Corchorus olitorius HOM05D000003 ORTHO05D000007 2.6e-09 68.2 94 31.9
AUR62020937 Chenopodium quinoa HOM05D000003 ORTHO05D011948 3.4e-09 67.8 221 23.5
Aqoxy3G02350 Aquilegia oxysepala HOM05D013112 ORTHO05D000006 4.5e-09 67.4 103 33.0
EL10Ac1g02112 Beta vulgaris HOM05D000003 ORTHO05D000006 4.5e-09 67.4 94 31.9
COL.COLO4_24337 Corchorus olitorius HOM05D009011 ORTHO05D009981 1.0e-08 66.2 212 28.3
Duzib106G1121 Durio zibethinus HOM05D009011 ORTHO05D013312 1.0e-08 66.2 149 28.9
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 1.0e-08 66.2 106 30.2
COL.COLO4_15664 Corchorus olitorius HOM05D017375 ORTHO05D009981 1.3e-08 65.9 182 24.2
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.3e-08 65.9 150 27.3
Haze_19953 Corylus avellana HOM05D009378 ORTHO05D010101 1.3e-08 65.9 191 27.2
Cfa016894 Carpinus fangiana HOM05D000125 ORTHO05D010101 2.2e-08 65.1 188 25.5
COL.COLO4_15663 Corchorus olitorius HOM05D009127 ORTHO05D009981 2.9e-08 64.7 110 33.6
Atru.chr10.1301 Acer truncatum HOM05D000003 ORTHO05D000006 5.0e-08 63.9 128 27.3
Cfa013571 Carpinus fangiana HOM05D000125 ORTHO05D010101 5.0e-08 63.9 197 26.9
Dinv43396 Davidia involucrata HOM05D017375 ORTHO05D006516 5.0e-08 63.9 94 34.0
Dinv13162 Davidia involucrata HOM05D000003 ORTHO05D000006 1.9e-07 62.0 65 40.0
PSO386G0019 Papaver somniferum HOM05D000003 ORTHO05D000006 1.9e-07 62.0 130 27.7
Gohir.A11G320566 Gossypium hirsutum HOM05D009011 ORTHO05D009981 2.5e-07 61.6 127 32.3
COL.COLO4_00219 Corchorus olitorius HOM05D013479 ORTHO05D011616 3.2e-07 61.2 108 34.3
Gohir.D06G093000 Gossypium hirsutum HOM05D009011 ORTHO05D013312 3.2e-07 61.2 124 32.3
COL.COLO4_25350 Corchorus olitorius HOM05D012200 ORTHO05D044732 4.2e-07 60.8 89 33.7
Rhsim11G0134900 Rhododendron simsii HOM05D003042 ORTHO05D003670 5.5e-07 60.5 82 30.5
COL.COLO4_10338 Corchorus olitorius HOM05D000003 ORTHO05D000006 7.2e-07 60.1 97 34.0
QL04p030880 Quercus lobata HOM05D000003 ORTHO05D000007 7.2e-07 60.1 52 51.9
AUR62029183 Chenopodium quinoa HOM05D012396 ORTHO05D000006 9.4e-07 59.7 111 28.8
QL09p024027 Quercus lobata HOM05D009378 ORTHO05D010101 9.4e-07 59.7 197 26.4
Aqoxy1G03091 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.2e-06 59.3 110 30.9
AUR62018650 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.2e-06 59.3 100 30.0
AUR62024307 Chenopodium quinoa HOM05D012396 ORTHO05D022326 1.2e-06 59.3 125 32.8
AUR62042149 Chenopodium quinoa HOM05D012396 ORTHO05D022326 1.2e-06 59.3 125 28.8
AUR62044667 Chenopodium quinoa HOM05D012396 ORTHO05D022326 1.2e-06 59.3 125 32.8
COL.COLO4_36825 Corchorus olitorius HOM05D008014 ORTHO05D009981 1.2e-06 59.3 166 27.7
Gohir.1Z049657 Gossypium hirsutum HOM05D009011 ORTHO05D013312 1.2e-06 59.3 124 32.3
Gohir.A06G093401 Gossypium hirsutum HOM05D009011 ORTHO05D013312 1.2e-06 59.3 124 32.3
Gohir.D11G339400 Gossypium hirsutum HOM05D009011 ORTHO05D013312 1.2e-06 59.3 136 29.4
PGR031G1316 Punica granatum HOM05D000125 ORTHO05D010101 1.2e-06 59.3 171 24.0
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 1.2e-06 59.3 107 32.7
Cfa007320 Carpinus fangiana HOM05D000125 ORTHO05D010101 2.1e-06 58.5 163 26.4
AUR62026508 Chenopodium quinoa HOM05D000003 ORTHO05D011948 2.1e-06 58.5 102 26.5
Haze_00511 Corylus avellana HOM05D009378 ORTHO05D010101 2.1e-06 58.5 137 27.0
Gohir.A05G086400 Gossypium hirsutum HOM05D041197 ORTHO05D036119 2.1e-06 58.5 216 25.9
COL.COLO4_35459 Corchorus olitorius HOM05D013479 ORTHO05D011616 2.7e-06 58.2 128 25.0
Gohir.A03G167000 Gossypium hirsutum HOM05D009011 ORTHO05D019097 2.7e-06 58.2 113 31.9
PSO017G3046 Papaver somniferum HOM05D053590 ORTHO05D000006 2.7e-06 58.2 107 30.8
Hund00928 Selenicereus undatus HOM05D025103 ORTHO05D011840 2.7e-06 58.2 87 32.2
COL.COLO4_06427 Corchorus olitorius HOM05D000003 ORTHO05D000006 4.6e-06 57.4 121 25.6
COL.COLO4_37013 Corchorus olitorius HOM05D013479 ORTHO05D011616 4.6e-06 57.4 110 28.2
Haze_13413 Corylus avellana HOM05D000125 ORTHO05D010101 4.6e-06 57.4 160 25.0
Gohir.A11G320700 Gossypium hirsutum HOM05D009011 ORTHO05D013312 4.6e-06 57.4 146 27.4
Gohir.D11G339900 Gossypium hirsutum HOM05D009011 ORTHO05D013312 6.1e-06 57.0 123 28.5
QL02p025388 Quercus lobata HOM05D000003 ORTHO05D011616 6.1e-06 57.0 104 31.7
Lj3g0003086 Lotus japonicus HOM05D000003 ORTHO05D000006 7.9e-06 56.6 70 37.1
QL06p049150 Quercus lobata HOM05D000003 ORTHO05D000007 7.9e-06 56.6 135 28.1


User provided reference genes

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