Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 8.4e-98 360.5 206 100.0
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 4.6e-80 301.6 207 81.2
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.3e-78 295.0 207 82.1
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 1.6e-77 293.1 207 83.1
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.4e-76 289.3 209 81.3
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-75 286.6 207 76.3
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.6e-75 285.8 207 80.7
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.1e-68 262.3 207 72.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.9e-68 261.2 207 72.5
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-67 260.0 207 72.5
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 6.5e-66 254.6 206 69.4
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.1e-60 237.3 203 66.0
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.4e-60 236.1 206 66.5
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 3.1e-60 235.7 206 66.0
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 5.3e-60 235.0 208 67.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 6.9e-60 234.6 207 64.7
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.5e-59 233.4 208 64.4
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.0e-58 230.7 209 65.6
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 3.8e-58 228.8 206 65.0
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 6.5e-58 228.0 206 65.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.1e-57 227.3 245 56.3
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.4e-57 226.9 206 66.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.4e-57 226.9 207 62.8
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.6e-56 223.4 207 64.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.6e-56 223.4 208 65.4
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 2.7e-56 222.6 206 65.5
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.3e-55 219.5 204 62.7
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 4.4e-54 215.3 207 66.2
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.4e-54 215.3 206 65.0
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.3e-53 213.8 239 61.1
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.3e-53 213.8 239 61.1
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 3.7e-53 212.2 206 61.7
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.8e-53 211.8 209 60.8
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.8e-53 211.8 209 60.8
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 4.8e-53 211.8 206 62.1
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 4.8e-53 211.8 206 61.2
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 6.3e-53 211.5 212 63.2
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.1e-52 210.7 206 67.5
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 4.1e-52 208.8 206 60.2
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 4.1e-52 208.8 234 54.3
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 5.3e-52 208.4 227 59.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 7.0e-52 208.0 208 61.5
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.2e-51 207.2 208 61.5
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.2e-51 207.2 234 54.3
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.5e-51 205.3 208 60.6
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.0e-50 204.1 191 67.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 8.5e-50 201.1 206 62.6
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.1e-49 200.7 210 61.4
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.5e-49 200.3 207 57.5
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 2.5e-49 199.5 209 60.8
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 7.2e-49 198.0 210 61.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 7.2e-49 198.0 213 57.7
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.2e-48 197.2 306 45.8
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.8e-47 193.4 254 49.2
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 5.2e-47 191.8 207 59.9
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 6.7e-47 191.4 225 62.7
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 3.3e-46 189.1 215 57.2
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.5e-46 188.0 208 58.7
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.5e-46 188.0 208 58.7
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 9.7e-46 187.6 213 54.9
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.7e-45 186.8 205 56.6
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.8e-45 186.0 213 55.9
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.2e-43 180.6 206 53.4
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 5.9e-43 178.3 189 60.3
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.3e-42 177.2 210 52.4
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 3.8e-42 175.6 198 55.6
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.5e-41 173.7 267 44.6
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.5e-41 173.7 267 44.6
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 3.2e-41 172.6 193 61.1
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 9.4e-41 171.0 212 57.1
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 9.4e-41 171.0 167 61.1
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.2e-40 170.6 206 52.4
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 8.0e-40 167.9 213 55.4
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.0e-39 167.5 209 51.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.4e-39 167.2 191 57.6
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 5.7e-38 161.8 209 53.1
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 2.8e-37 159.5 218 48.6
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 2.8e-37 159.5 208 52.4
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.4e-36 156.4 210 54.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 5.4e-36 155.2 211 49.3
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 7.0e-36 154.8 294 40.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.0e-35 153.3 215 52.1
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.7e-35 152.9 200 49.0
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.9e-35 151.8 119 72.3
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.9e-35 151.8 119 72.3
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 7.7e-35 151.4 184 52.2
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.0e-34 151.0 219 53.9
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.3e-34 150.6 216 47.7
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 5.0e-34 148.7 256 44.9
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.1e-33 147.5 216 48.1
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.9e-33 146.7 119 68.9
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.3e-33 146.0 214 50.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 3.3e-33 146.0 119 68.9
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 5.5e-33 145.2 119 69.7
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 5.5e-33 145.2 120 68.3
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 7.2e-33 144.8 119 67.2
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.2e-33 144.8 123 67.5
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 9.5e-33 144.4 133 61.7
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.6e-32 142.5 208 47.6
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 4.7e-32 142.1 211 46.4
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.4e-31 140.6 211 46.4
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.2e-30 137.5 215 46.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 2.0e-30 136.7 140 57.1
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 3.4e-30 136.0 257 41.6
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.7e-29 133.7 215 43.3
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.2e-29 133.3 185 48.6
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.7e-29 132.5 308 38.0
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 7.0e-28 128.3 119 62.2
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.5e-27 125.9 160 49.4
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.0e-26 124.4 268 39.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.1e-25 120.9 237 41.8
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-24 117.5 109 63.3
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-24 117.5 109 63.3
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.2e-24 117.5 109 63.3
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.6e-24 115.9 203 41.9
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.8e-23 113.6 102 65.7
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.2e-23 112.1 182 44.0
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.6e-22 109.8 180 42.8
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 9.8e-22 107.8 202 42.6
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.3e-21 107.5 120 55.8
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.7e-21 107.1 192 46.4
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 2.2e-21 106.7 120 53.3
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 6.4e-21 105.1 198 43.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 4.1e-20 102.4 120 55.0
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.2e-19 100.9 135 50.4
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 3.5e-19 99.4 110 54.5
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 7.8e-19 98.2 206 38.8
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.7e-18 97.1 180 41.7
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 3.9e-18 95.9 213 36.2
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.5e-17 94.0 73 72.6
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 6.2e-16 88.6 122 48.4
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 8.0e-16 88.2 184 38.6
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.1e-15 87.8 269 34.6
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 8.9e-15 84.7 120 45.8
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.5e-14 84.0 120 45.8
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.0e-14 83.6 89 56.2
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.0e-14 83.6 89 56.2
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 2.6e-14 83.2 69 66.7
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 2.2e-13 80.1 215 34.0
Gohir.A12G236850 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.9e-13 79.7 109 51.4
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 3.2e-12 76.3 118 43.2
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 3.2e-12 76.3 82 54.9
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 9.2e-12 74.7 55 70.9
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 7.8e-11 71.6 91 51.6
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.6e-10 68.6 71 54.9
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 8.6e-10 68.2 57 70.2
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 1.6e-08 63.9 95 46.3
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 3.6e-08 62.8 89 46.1
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 8.1e-08 61.6 56 57.1
TAR636G1289 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.1e-07 59.7 102 43.1
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 2.6e-06 56.6 95 46.3


User provided reference genes

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