Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 4.6e-129 464.5 232 100.0
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 1.6e-113 412.9 232 87.9
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 2.2e-107 392.5 234 85.5
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 5.7e-103 377.9 232 82.8
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 6.6e-91 337.8 232 76.3
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.9e-90 336.3 238 71.0
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 3.3e-90 335.5 232 75.9
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 2.1e-89 332.8 235 69.4
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 7.5e-87 324.3 241 66.8
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 7.5e-87 324.3 241 68.0
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.7e-83 313.2 249 67.1
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 2.3e-83 312.8 238 68.1
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 2.3e-83 312.8 238 68.1
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 8.6e-83 310.8 236 68.2
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 4.3e-82 308.5 227 69.6
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 1.6e-81 306.6 238 67.6
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 4.7e-81 305.1 235 67.2
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 1.4e-80 303.5 236 66.1
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 1.8e-80 303.1 234 65.0
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 2.3e-80 302.8 244 66.8
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 5.2e-80 301.6 244 66.8
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 6.8e-80 301.2 239 66.9
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 2.0e-79 299.7 235 65.5
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 5.8e-79 298.1 242 66.1
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 6.4e-78 294.7 236 65.7
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 8.3e-78 294.3 227 66.1
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 8.3e-78 294.3 248 62.5
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 2.4e-77 292.7 248 62.5
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.0e-77 291.2 248 62.1
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 2.7e-76 289.3 245 62.4
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 6.0e-76 288.1 237 62.0
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 6.0e-76 288.1 242 60.3
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 1.7e-75 286.6 232 64.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 3.9e-75 285.4 239 64.0
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 5.0e-75 285.0 241 63.1
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 1.1e-74 283.9 237 61.2
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 1.5e-74 283.5 240 62.5
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.5e-74 283.5 240 62.1
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.5e-74 282.7 248 61.3
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 3.3e-74 282.3 241 61.8
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 5.6e-74 281.6 241 63.1
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 7.3e-74 281.2 244 59.8
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 7.3e-74 281.2 240 62.1
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.3e-74 281.2 247 61.1
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 2.8e-73 279.3 241 60.6
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 3.6e-73 278.9 242 60.3
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.7e-73 278.5 248 60.5
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 6.2e-73 278.1 246 59.3
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 6.2e-73 278.1 241 60.6
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 6.2e-73 278.1 236 61.9
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 1.1e-72 277.3 239 61.1
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.1e-72 277.3 241 60.2
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 4.0e-72 275.4 182 73.6
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 2.0e-71 273.1 240 59.2
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 3.4e-71 272.3 239 58.6
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 3.4e-71 272.3 242 58.3
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 7.5e-71 271.2 239 58.6
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 9.9e-71 270.8 236 61.4
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.7e-70 270.0 182 72.5
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 2.2e-70 269.6 242 57.0
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 4.9e-70 268.5 240 57.5
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 9.2e-69 264.2 248 60.9
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 9.2e-69 264.2 229 61.1
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 1.2e-68 263.8 243 58.4
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 1.2e-68 263.8 245 58.8
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 2.1e-68 263.1 244 59.8
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 7.8e-68 261.2 242 57.9
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 2.3e-67 259.6 242 58.3
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 3.9e-67 258.8 193 67.9
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 7.3e-66 254.6 173 70.5
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 9.5e-66 254.2 237 58.6
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 9.5e-66 254.2 247 57.9
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 1.1e-64 250.8 228 59.2
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 1.8e-64 250.0 187 65.2
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 5.2e-64 248.4 180 68.9
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.5e-63 246.9 239 56.9
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 2.6e-63 246.1 243 55.6
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 3.4e-63 245.7 236 56.4
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 7.6e-63 244.6 207 59.9
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.7e-62 243.4 234 56.8
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 2.7e-60 236.1 226 56.6
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 2.7e-60 236.1 236 54.2
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 3.0e-59 232.6 235 56.2
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 5.1e-59 231.9 265 50.6
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.2e-57 227.3 134 79.1
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 2.1e-57 226.5 254 52.8
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 2.1e-57 226.5 263 49.4
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 2.1e-57 226.5 208 58.2
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.7e-57 225.3 233 52.8
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.1e-56 224.2 245 52.2
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 5.2e-56 221.9 189 59.3
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 5.2e-56 221.9 189 59.3
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 7.1e-53 211.5 218 52.3
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 2.7e-52 209.5 234 52.1
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 3.2e-45 186.0 189 50.8
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 3.5e-44 182.6 187 50.3
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 7.9e-44 181.4 187 51.9
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 3.1e-40 169.5 245 44.5
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 2.1e-36 156.8 190 47.4
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.3e-33 147.5 241 42.7
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.7e-33 146.0 143 56.6
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 3.2e-29 132.9 166 47.6
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 3.2e-29 132.9 166 47.6
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 4.2e-29 132.5 166 45.8
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 1.2e-28 131.0 147 53.1
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 3.9e-27 125.9 134 50.0
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 1.9e-26 123.6 150 47.3
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 4.3e-26 122.5 227 38.8
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 4.3e-26 122.5 227 38.8
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 8.2e-25 118.2 139 47.5
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 8.2e-25 118.2 129 52.7
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.1e-24 117.9 126 52.4
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 1.1e-24 117.9 156 41.0
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 1.4e-24 117.5 151 45.0
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 5.3e-24 115.5 137 51.1
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.2e-23 114.4 138 50.0
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 5.9e-23 112.1 153 42.5
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 3.8e-22 109.4 141 44.7
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 5.5e-21 105.5 155 43.2
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 2.1e-20 103.6 126 46.8
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.5e-18 97.4 115 47.0
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 5.7e-18 95.5 92 54.3
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.7e-14 84.0 117 49.6
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 2.7e-12 76.6 65 58.5
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 4.8e-09 65.9 53 62.3


User provided reference genes

Program Settings