Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 8.3e-88 327.0 167 100.0
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 3.7e-43 178.7 146 66.4
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 2.1e-38 162.9 164 56.7
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 4.6e-38 161.8 157 63.7
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 5.1e-37 158.3 137 62.8
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.1e-36 157.1 165 55.2
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 3.0e-29 132.5 147 55.8
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 5.1e-29 131.7 147 55.1
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.5e-28 130.2 147 55.8
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 1.0e-21 107.5 120 53.3
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.4e-20 101.3 143 46.2
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 9.7e-20 100.9 143 46.9
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.7e-19 100.1 143 46.2
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.7e-19 100.1 143 46.2
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.8e-19 98.6 126 46.8
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.8e-19 98.6 143 45.5
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.8e-19 98.6 143 45.5
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 4.8e-19 98.6 127 51.2
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 8.2e-19 97.8 120 49.2
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.1e-18 97.4 150 40.7
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 1.4e-18 97.1 144 45.1
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 1.4e-18 97.1 127 48.8
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.8e-18 96.7 146 42.5
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 1.8e-18 96.7 152 42.8
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 4.1e-18 95.5 139 46.0
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 7.0e-18 94.7 125 46.4
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 9.1e-18 94.4 138 46.4
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 9.1e-18 94.4 126 50.8
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.2e-17 94.0 135 48.9
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 1.2e-17 94.0 156 38.5
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 2.0e-17 93.2 156 38.5
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 2.6e-17 92.8 115 53.0
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.3e-16 90.5 133 44.4
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.3e-16 90.5 133 44.4
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 1.7e-16 90.1 121 44.6
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 1.7e-16 90.1 110 50.0
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 5.0e-16 88.6 117 44.4
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 6.5e-16 88.2 131 45.8
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 8.5e-16 87.8 142 40.1
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 1.5e-15 87.0 142 40.1
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.5e-15 87.0 142 40.1
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 1.2e-14 84.0 144 41.0
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 2.7e-14 82.8 100 50.0
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.6e-14 82.4 115 45.2
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.6e-14 82.4 136 41.2
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 6.1e-14 81.6 111 44.1
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 8.0e-14 81.3 112 48.2
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 8.0e-14 81.3 117 42.7
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.4e-13 80.5 120 46.7
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.8e-13 80.1 119 45.4
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 2.3e-13 79.7 64 68.8
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.3e-13 79.7 95 49.5
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.3e-13 79.7 109 41.3
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.0e-13 79.3 152 40.8
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 4.0e-13 79.0 162 38.9
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.2e-13 78.6 64 62.5
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.2e-13 78.6 64 62.5
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 6.7e-13 78.2 108 44.4
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 6.7e-13 78.2 142 42.3
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 1.5e-12 77.0 114 45.6
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 2.0e-12 76.6 128 43.0
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 5.7e-12 75.1 110 44.5
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.7e-11 72.4 125 41.6
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 3.7e-11 72.4 101 40.6
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 3.7e-11 72.4 137 33.6
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 6.3e-11 71.6 103 42.7
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 1.8e-10 70.1 66 53.0
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 2.4e-10 69.7 129 38.8
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 9.1e-10 67.8 100 41.0
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 2.0e-09 66.6 103 45.6
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 2.0e-09 66.6 132 40.2
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 2.7e-09 66.2 121 40.5
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 4.5e-09 65.5 99 40.4
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 1.0e-08 64.3 107 40.2
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 1.0e-08 64.3 45 71.1
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 1.0e-08 64.3 79 39.2
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.9e-08 62.8 114 35.1
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 3.8e-08 62.4 75 41.3
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 1.5e-07 60.5 127 33.1
Peaxi162Scf00074g00091 Petunia axillaris HOM05D011491 ORTHO05D009078 1.5e-07 60.5 102 38.2
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 3.2e-07 59.3 125 32.8
TAR374G1599 Trochodendron aralioides HOM05D026466 ORTHO05D009078 3.2e-07 59.3 130 40.8
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 9.4e-07 57.8 75 48.0
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 9.4e-07 57.8 108 37.0
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 1.6e-06 57.0 112 38.4
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 2.7e-06 56.2 42 59.5
PGSC0003DMG400012144 Solanum tuberosum HOM05D011491 ORTHO05D009078 2.7e-06 56.2 126 34.1
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 2.7e-06 56.2 175 28.6
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 3.6e-06 55.8 169 31.4
Solyc08g082380.1 Solanum lycopersicum HOM05D011491 ORTHO05D009078 4.7e-06 55.5 107 35.5
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 6.1e-06 55.1 42 54.8
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 8.0e-06 54.7 52 51.9
Nitab4.5_0002782g0020 Nicotiana tabacum HOM05D011491 ORTHO05D009078 8.0e-06 54.7 105 38.1


User provided reference genes

Program Settings