Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.5e-101 372.9 187 100.0
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 7.2e-80 300.8 189 82.5
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 4.3e-77 291.6 211 73.0
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 7.7e-74 280.8 192 79.2
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.0e-73 280.4 192 79.2
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.2e-73 279.3 192 78.6
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.1e-69 266.9 186 77.4
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 4.8e-68 261.5 186 72.6
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 4.1e-67 258.5 192 74.5
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 2.2e-65 252.7 192 68.8
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 2.5e-64 249.2 187 69.0
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 4.2e-64 248.4 190 68.4
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 5.5e-64 248.1 189 70.4
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 3.6e-63 245.4 189 70.4
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 1.4e-62 243.4 188 71.8
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 3.0e-62 242.3 192 66.7
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 1.3e-60 236.9 174 69.5
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 4.8e-60 235.0 160 74.4
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 4.8e-60 235.0 191 64.4
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 6.3e-60 234.6 182 68.1
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 6.3e-60 234.6 183 66.7
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.4e-59 233.4 181 66.9
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 2.4e-59 232.6 185 70.8
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 2.4e-59 232.6 183 66.7
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 7.0e-59 231.1 181 65.7
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 4.5e-58 228.4 179 67.6
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 4.5e-58 228.4 177 68.9
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 5.9e-58 228.0 187 66.8
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.0e-57 227.3 171 68.4
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.3e-57 226.9 192 63.5
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 1.3e-57 226.9 172 71.5
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.7e-57 226.5 148 78.4
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 2.9e-57 225.7 186 66.7
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.5e-57 224.6 192 63.5
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.5e-57 224.6 192 63.0
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 6.5e-57 224.6 194 61.9
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 8.5e-57 224.2 200 62.0
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 1.5e-56 223.4 186 66.1
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.9e-56 223.0 192 63.5
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.9e-56 223.0 186 65.6
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.9e-56 223.0 171 71.9
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 1.9e-56 223.0 161 72.0
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 4.2e-56 221.9 144 76.4
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 5.5e-56 221.5 192 63.0
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 6.1e-55 218.0 178 66.3
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 8.0e-55 217.6 185 62.7
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 1.0e-54 217.2 180 63.9
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 1.4e-54 216.9 174 66.1
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.4e-54 216.9 188 65.4
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 1.4e-54 216.9 180 68.3
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.8e-54 216.5 147 74.8
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 2.3e-54 216.1 186 65.1
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 3.0e-54 215.7 158 72.8
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 3.0e-54 215.7 151 72.8
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 4.0e-54 215.3 193 64.2
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 5.2e-54 214.9 133 80.5
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.2e-53 213.8 158 69.0
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 1.5e-53 213.4 183 65.0
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 2.6e-53 212.6 139 79.1
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 2.6e-53 212.6 160 69.4
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 2.6e-53 212.6 155 71.0
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 4.4e-53 211.8 133 79.7
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 7.5e-53 211.1 185 65.4
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 2.2e-52 209.5 126 82.5
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 3.7e-52 208.8 176 65.9
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 4.8e-52 208.4 144 75.0
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 6.3e-52 208.0 139 79.1
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 6.3e-52 208.0 180 66.1
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 6.3e-52 208.0 169 65.7
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 8.3e-52 207.6 147 76.2
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 8.3e-52 207.6 167 68.3
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 8.3e-52 207.6 169 64.5
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 8.3e-52 207.6 199 59.8
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 1.7e-49 199.9 133 78.2
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 3.8e-49 198.7 132 75.8
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 6.5e-49 198.0 168 64.9
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 8.5e-49 197.6 158 69.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.9e-48 196.4 167 65.3
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 4.2e-48 195.3 195 60.0
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 7.2e-48 194.5 183 63.9
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 7.2e-48 194.5 186 60.8
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 9.4e-48 194.1 133 75.9
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 9.4e-48 194.1 133 75.9
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 2.7e-47 192.6 172 62.2
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 6.1e-47 191.4 132 69.7
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 8.0e-47 191.0 145 67.6
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 8.0e-47 191.0 127 77.2
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 8.0e-47 191.0 129 80.6
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 2.3e-46 189.5 174 63.2
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.3e-46 189.5 129 79.8
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 3.0e-46 189.1 124 78.2
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 4.0e-46 188.7 132 72.7
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 4.0e-46 188.7 175 62.9
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 4.0e-46 188.7 128 72.7
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 5.2e-46 188.3 176 61.9
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 8.8e-46 187.6 163 65.0
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 8.8e-46 187.6 174 63.2
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 8.8e-46 187.6 128 77.3
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 3.4e-45 185.7 172 63.4
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 5.7e-45 184.9 166 64.5
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 3.7e-44 182.2 189 58.7
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 3.5e-42 175.6 107 82.2
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 8.0e-39 164.5 117 68.4
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.7e-36 156.8 135 62.2
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 3.7e-36 155.6 107 72.9
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 4.1e-35 152.1 122 63.1
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 7.0e-35 151.4 118 71.2
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.5e-32 143.7 88 83.0
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.6e-31 139.0 153 54.2
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 2.3e-30 136.3 124 62.1
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 6.8e-30 134.8 126 62.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 4.4e-29 132.1 120 63.3
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 9.8e-29 131.0 76 85.5
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 2.9e-28 129.4 80 82.5
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 8.3e-28 127.9 122 61.5
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 4.1e-27 125.6 189 44.4
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 7.0e-27 124.8 83 80.7
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 1.7e-25 120.2 106 62.3
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 1.7e-25 120.2 115 60.0
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 8.6e-25 117.9 62 90.3
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 1.4e-22 110.5 66 83.3
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.9e-19 100.1 90 58.9
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.1e-19 99.0 129 49.6
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 6.0e-18 95.1 71 71.8
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.7e-17 93.6 72 62.5
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 3.0e-17 92.8 64 71.9
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.1e-16 90.9 108 45.4
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.4e-14 84.0 89 49.4
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 2.1e-10 70.1 79 51.9
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 9.6e-08 61.2 102 38.2
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 1.6e-07 60.5 85 44.7


User provided reference genes

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