Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.4e-204 716.1 370 100.0
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 4.4e-174 614.8 370 86.2
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 4.4e-174 614.8 371 87.1
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.8e-173 611.7 367 86.4
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 7.8e-171 604.0 369 85.1
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 7.8e-171 604.0 372 85.5
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 3.0e-170 602.1 364 86.3
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 9.6e-161 570.5 371 83.0
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.8e-160 568.9 371 82.5
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 2.1e-147 526.2 372 73.4
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.4e-143 512.7 370 77.6
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.5e-142 510.0 373 72.4
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 1.4e-140 503.4 372 72.3
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 1.9e-137 493.0 405 65.9
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 2.5e-137 492.7 367 70.3
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 4.3e-137 491.9 374 69.8
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 7.7e-134 481.1 367 71.1
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 5.0e-133 478.4 367 70.8
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 4.2e-132 475.3 367 70.3
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.7e-131 472.6 374 67.9
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 2.3e-130 469.5 369 69.1
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.5e-129 466.8 372 68.3
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 2.4e-127 459.5 370 68.9
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 2.6e-126 456.1 365 66.8
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 4.5e-126 455.3 415 62.2
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.3e-125 453.8 404 65.1
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 2.2e-125 453.0 414 61.6
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 5.0e-125 451.8 368 66.8
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 5.0e-125 451.8 372 66.9
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 6.5e-125 451.4 377 65.3
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 8.5e-125 451.1 368 66.3
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 5.5e-124 448.4 393 63.4
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 1.0e-122 444.1 380 64.2
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 1.8e-122 443.4 372 65.1
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 6.7e-122 441.4 371 64.2
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 6.7e-122 441.4 368 67.1
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 8.8e-122 441.0 372 65.3
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 1.1e-121 440.7 374 65.2
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 2.0e-121 439.9 372 65.3
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 4.4e-121 438.7 372 65.9
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 9.7e-121 437.6 374 64.7
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 2.8e-120 436.0 373 64.3
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 3.7e-120 435.6 371 65.2
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 4.8e-120 435.3 369 66.1
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.1e-119 434.1 369 64.5
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 1.8e-119 433.3 373 63.8
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 7.0e-119 431.4 368 64.1
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 3.5e-118 429.1 371 65.0
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 3.5e-118 429.1 375 64.0
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 5.9e-118 428.3 372 64.0
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.3e-117 427.2 379 61.7
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 2.2e-117 426.4 374 63.9
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 6.5e-117 424.9 373 64.3
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 8.5e-117 424.5 367 64.3
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.1e-116 424.1 370 64.1
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 1.5e-116 423.7 370 64.1
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.9e-116 423.3 373 62.7
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.5e-116 421.8 370 63.5
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 5.5e-116 421.8 367 62.9
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 1.2e-115 420.6 385 61.0
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.6e-115 420.2 374 63.9
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 8.0e-115 417.9 371 63.6
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 3.9e-114 415.6 372 60.8
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 8.8e-114 414.5 383 63.2
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 2.6e-113 412.9 366 62.3
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 5.7e-113 411.8 373 60.3
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.7e-112 410.2 367 62.7
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.8e-111 406.8 358 64.5
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 4.1e-111 405.6 377 61.3
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 2.6e-110 402.9 376 59.8
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.5e-110 402.5 374 61.0
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.0e-109 401.0 367 62.1
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 8.5e-109 397.9 370 58.9
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 4.2e-108 395.6 377 61.3
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 9.4e-108 394.4 398 57.8
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.4e-106 390.6 375 58.7
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 2.6e-105 386.3 380 58.7
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 2.6e-105 386.3 406 55.7
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 2.6e-105 386.3 384 57.8
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 3.4e-105 386.0 394 57.1
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 4.4e-105 385.6 393 56.5
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 5.7e-105 385.2 411 56.2
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 7.5e-105 384.8 387 56.1
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 1.3e-104 384.0 367 58.0
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 2.2e-104 383.3 405 56.8
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 8.3e-104 381.3 407 55.8
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.1e-103 380.9 398 55.3
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 1.1e-103 380.9 406 56.2
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 2.0e-102 376.7 387 56.3
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 2.7e-102 376.3 407 55.3
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 3.8e-101 372.5 408 55.1
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.8e-101 372.5 376 58.8
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 5.0e-101 372.1 410 54.6
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 5.0e-101 372.1 409 53.5
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.6e-99 367.1 391 55.5
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 8.0e-99 364.8 399 54.9
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.8e-98 363.6 392 55.1
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 2.3e-98 363.2 353 57.2
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 2.3e-98 363.2 393 56.2
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 4.0e-98 362.5 412 53.9
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.5e-97 360.5 411 53.5
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 8.3e-96 354.8 389 53.7
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 5.4e-95 352.1 395 53.4
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 5.9e-94 348.6 403 53.1
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 5.9e-94 348.6 355 56.3
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.9e-92 343.6 311 59.8
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 4.7e-91 339.0 283 64.7
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 3.0e-90 336.3 373 54.7
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 4.0e-90 335.9 364 55.2
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.2e-89 334.3 368 56.2
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.5e-84 317.4 329 56.8
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 9.5e-84 314.7 432 45.6
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 9.3e-55 218.4 276 48.9
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.7e-54 216.9 402 39.3
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 6.6e-53 212.2 204 58.3
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 6.6e-53 212.2 204 58.3
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 6.6e-53 212.2 204 58.3
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 8.7e-53 211.8 366 39.1
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 3.6e-51 206.5 482 35.5
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 3.1e-50 203.4 295 45.1
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 6.0e-46 189.1 530 32.3
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 6.6e-45 185.7 142 69.7
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.8e-42 177.6 389 38.6
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 3.1e-42 176.8 171 57.9
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 5.3e-42 176.0 143 65.0
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.3e-37 160.6 398 34.4
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.8e-35 153.7 149 59.7
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 1.3e-32 144.8 192 49.5
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 4.8e-27 126.3 313 32.9
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.2e-23 113.6 197 39.1
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 6.1e-22 109.4 376 29.5
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 6.1e-22 109.4 376 29.5
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 6.9e-18 95.9 104 51.9
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.0e-13 82.0 114 46.5
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.3e-11 75.1 45 77.8
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 4.2e-07 60.1 76 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4702 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.6e-06 58.2 129 32.6
MCO11G547 Micromonas commoda HOM05D005438 ORTHO05D006744 1.6e-06 58.2 317 24.3


User provided reference genes

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