Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 2.9e-160 568.5 290 100.0
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.4e-135 485.7 290 85.2
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 2.8e-115 419.1 276 79.0
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.1e-110 402.9 277 77.6
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 3.5e-110 402.1 277 77.6
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.5e-108 396.7 277 76.9
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 5.7e-84 315.1 292 59.2
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.1e-82 308.9 290 58.6
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.2e-81 307.4 291 58.4
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.6e-81 306.2 289 57.8
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.1e-78 296.6 296 57.4
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.2e-76 290.8 292 56.2
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.8e-74 283.5 310 55.2
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.4e-74 283.1 310 52.9
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.7e-73 279.6 316 50.6
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.5e-73 279.3 294 55.1
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.0e-72 277.7 293 53.9
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.2e-69 265.4 294 53.7
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 5.2e-69 265.4 305 53.4
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.3e-67 260.8 295 52.9
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.2e-67 260.0 305 51.1
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.4e-66 257.3 298 50.0
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 9.1e-66 254.6 298 50.0
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.2e-65 254.2 306 51.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.6e-65 253.8 291 52.2
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 2.7e-65 253.1 310 49.4
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 7.7e-65 251.5 292 50.7
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.2e-63 245.7 283 50.9
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 5.5e-63 245.4 300 50.7
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 9.5e-63 244.6 395 41.8
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.6e-62 243.8 296 48.3
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 1.0e-61 241.1 293 50.2
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 3.0e-61 239.6 304 49.3
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 8.8e-61 238.0 254 51.6
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.2e-60 237.7 369 43.1
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 4.4e-60 235.7 293 48.5
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 4.4e-60 235.7 291 49.5
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.8e-60 234.6 301 46.5
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.7e-59 233.8 298 48.0
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.8e-59 233.0 298 49.3
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.8e-59 233.0 384 41.1
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 3.7e-59 232.6 292 47.6
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 4.9e-59 232.3 300 46.0
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.1e-58 231.1 292 47.6
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 3.1e-58 229.6 292 47.9
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 3.1e-58 229.6 307 46.9
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.1e-58 229.6 300 47.0
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.7e-57 226.5 343 44.6
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 3.5e-57 226.1 291 45.4
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.8e-57 224.9 280 47.5
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 7.8e-57 224.9 393 40.2
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.7e-56 223.8 300 46.0
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 3.8e-56 222.6 341 41.1
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 6.6e-56 221.9 271 47.6
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 8.6e-56 221.5 281 45.9
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 5.6e-55 218.8 342 40.6
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 9.5e-55 218.0 293 45.4
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.6e-54 217.2 293 47.4
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 2.1e-54 216.9 338 41.4
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.8e-54 216.5 315 42.5
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 3.6e-54 216.1 291 47.8
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 4.7e-54 215.7 291 44.3
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 6.1e-54 215.3 289 45.3
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 8.0e-54 214.9 306 47.7
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.8e-53 213.8 284 44.0
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.0e-53 213.0 323 46.4
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 4.0e-53 212.6 333 44.4
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 4.0e-53 212.6 212 57.5
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 5.2e-53 212.2 291 44.3
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.0e-52 210.3 291 43.6
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 2.6e-52 209.9 165 66.1
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 2.6e-52 209.9 342 40.6
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 3.4e-52 209.5 308 46.4
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.4e-52 209.5 282 44.7
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 6.4e-51 205.3 361 38.0
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.1e-50 204.5 298 45.3
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.4e-50 203.4 242 48.8
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.2e-50 203.0 350 39.4
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 9.2e-50 201.4 275 45.1
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.7e-49 199.9 316 40.5
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 5.9e-49 198.7 280 46.1
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.3e-48 197.6 279 45.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-48 197.6 281 45.6
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 3.0e-48 196.4 302 43.4
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 5.0e-48 195.7 268 44.0
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.0e-48 195.7 373 36.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 6.6e-48 195.3 325 41.8
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.3e-47 193.0 360 35.8
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.6e-47 192.2 302 43.0
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 9.5e-47 191.4 359 39.3
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.6e-46 190.7 361 39.3
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.6e-46 189.5 176 60.8
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.6e-46 189.5 176 60.8
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 3.6e-46 189.5 295 41.4
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 4.7e-46 189.1 297 44.4
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 4.7e-46 189.1 243 47.7
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 2.3e-45 186.8 289 41.9
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.0e-44 183.7 268 44.8
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 2.0e-44 183.7 386 32.6
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 2.6e-44 183.3 271 43.5
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 2.6e-44 183.3 271 43.5
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.3e-43 181.0 226 48.2
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.3e-43 181.0 351 37.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.2e-43 180.3 383 36.0
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.7e-43 179.5 285 42.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.4e-42 177.6 348 35.1
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.9e-42 177.2 321 38.6
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 1.9e-42 177.2 288 39.6
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.2e-42 176.4 172 54.1
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.2e-41 174.5 179 52.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.2e-41 174.5 260 44.2
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.2e-41 174.5 260 44.2
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.0e-41 173.7 322 38.5
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 3.5e-41 172.9 216 46.3
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 7.8e-41 171.8 340 35.6
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.7e-40 170.6 286 39.9
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 5.0e-40 169.1 269 41.6
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 5.0e-40 169.1 210 46.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 6.6e-40 168.7 329 38.6
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.6e-40 168.7 197 46.7
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 8.6e-40 168.3 258 44.2
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.5e-39 167.5 241 45.6
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.5e-39 167.5 281 39.9
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 2.5e-39 166.8 351 35.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 3.6e-38 162.9 221 48.4
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 6.2e-38 162.2 228 47.8
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 2.3e-37 160.2 232 42.7
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.1e-37 159.8 262 43.5
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 5.2e-37 159.1 219 47.9
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 2.0e-36 157.1 197 49.2
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.6e-36 156.8 283 37.8
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.6e-36 156.8 239 42.7
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 2.9e-35 153.3 243 39.9
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 4.1e-34 149.4 246 40.7
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 5.4e-34 149.1 293 38.9
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.6e-33 147.5 249 38.2
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.6e-33 147.5 284 35.6
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 7.8e-33 145.2 234 40.6
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 6.6e-32 142.1 271 41.3
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 8.6e-32 141.7 257 39.3
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 7.3e-31 138.7 261 39.8
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-30 136.3 118 58.5
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 6.2e-30 135.6 267 33.0
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 6.8e-29 132.1 108 58.3
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 8.9e-29 131.7 187 42.2
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 6.4e-27 125.6 236 34.7
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.4e-26 122.5 87 65.5
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 9.2e-26 121.7 221 38.0
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.6e-25 120.9 155 42.6
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 7.1e-18 95.5 228 31.1
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 4.3e-15 86.3 106 46.2
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 2.1e-14 84.0 190 35.3
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 9.0e-13 78.6 175 35.4
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.4e-12 76.6 99 43.4
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 4.5e-12 76.3 304 30.3
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 5.8e-12 75.9 56 57.1
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 2.4e-10 70.5 73 56.2
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 5.4e-10 69.3 137 35.0
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.6e-09 67.8 55 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.7e-09 67.0 155 32.3
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 1.0e-08 65.1 131 35.1
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.0e-08 63.5 95 42.1
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.5e-07 60.5 88 40.9
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 4.3e-07 59.7 64 43.8
CAN.G774.36 Capsicum annuum HOM05D004296 ORTHO05D005045 5.6e-07 59.3 95 44.2
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 6.2e-06 55.8 88 40.9
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 8.1e-06 55.5 119 30.3


User provided reference genes

Program Settings