Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 0.0e+00 1321.6 712 100.0
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 0.0e+00 1211.1 712 86.8
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 0.0e+00 1156.7 715 81.3
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 2.6e-303 1045.0 595 82.7
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 2.8e-302 1041.6 604 80.3
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 3.7e-302 1041.2 603 80.9
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 2.4e-301 1038.5 613 79.0
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 8.5e-299 1030.0 609 78.8
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 1.1e-298 1029.6 599 80.1
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 2.7e-297 1025.0 595 81.0
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 3.0e-296 1021.5 613 79.1
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 2.6e-295 1018.5 614 77.2
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 2.0e-292 1008.8 603 77.8
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 2.7e-292 1008.4 694 71.3
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.7e-291 1005.7 704 69.2
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 1.7e-291 1005.7 605 76.2
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 1.9e-290 1002.3 606 76.4
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 8.0e-289 996.9 666 72.2
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 1.4e-288 996.1 609 77.5
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 2.3e-288 995.3 612 76.0
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 4.0e-288 994.6 681 77.4
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 4.0e-288 994.6 593 77.1
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 6.8e-288 993.8 582 77.7
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 2.2e-286 988.8 649 74.4
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 2.2e-286 988.8 611 75.1
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 6.3e-286 987.3 599 77.1
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 1.2e-284 983.0 609 75.4
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 2.9e-283 978.4 592 76.2
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 6.5e-283 977.2 601 75.9
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 8.6e-283 976.9 586 77.1
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 8.6e-283 976.9 592 77.9
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 1.9e-282 975.7 608 73.7
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 1.2e-281 973.0 634 72.2
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 2.1e-281 972.2 659 71.2
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 3.6e-281 971.5 610 73.8
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 1.4e-280 969.5 598 75.6
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 2.3e-280 968.8 586 76.6
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 4.4e-279 964.5 582 76.5
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 1.7e-278 962.6 646 70.6
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 1.1e-277 959.9 641 70.8
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 4.5e-276 954.5 597 73.2
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.0e-275 953.4 597 73.2
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 3.8e-275 951.4 611 74.1
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 1.5e-274 949.5 596 74.2
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 7.3e-274 947.2 598 73.9
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 7.3e-274 947.2 609 73.6
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 6.1e-273 944.1 618 72.0
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 6.4e-270 934.1 772 59.3
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 1.1e-269 933.3 539 80.7
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 4.6e-268 927.9 615 71.7
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 8.6e-267 923.7 606 71.1
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 2.5e-266 922.2 590 73.4
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 3.3e-266 921.8 594 73.1
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 3.3e-266 921.8 602 71.3
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 3.3e-266 921.8 852 59.3
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.3e-266 920.6 656 69.1
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 1.6e-265 919.5 534 80.1
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 2.8e-265 918.7 589 73.3
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 8.9e-264 913.7 630 68.7
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 9.8e-263 910.2 713 68.4
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 9.8e-263 910.2 528 80.1
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 2.2e-262 909.1 583 71.0
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 7.0e-261 904.0 610 70.5
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 3.9e-259 898.3 602 70.8
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.1e-258 896.7 651 67.1
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 1.2e-257 893.3 524 76.7
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 4.7e-257 891.3 586 71.5
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 2.9e-254 882.1 527 76.7
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 8.3e-254 880.6 597 71.4
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 1.9e-253 879.4 766 59.7
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.6e-252 876.3 708 70.3
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.6e-252 876.3 524 76.7
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 2.3e-251 872.5 570 72.5
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 2.0e-247 859.4 627 69.5
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.0e-243 845.5 610 69.3
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 2.2e-238 829.3 483 78.1
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 1.6e-236 823.2 497 77.7
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 6.9e-232 807.7 640 63.0
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 7.6e-231 804.3 546 71.2
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 6.7e-227 791.2 613 64.3
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.1e-225 786.2 505 77.4
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 2.1e-225 786.2 557 68.4
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 4.8e-225 785.0 505 82.0
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.7e-222 776.5 510 70.8
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.0e-219 767.3 524 70.4
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.5e-218 763.5 621 62.8
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 3.7e-217 758.8 508 71.9
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 4.6e-212 741.9 524 68.7
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.6e-207 726.1 589 59.1
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.5e-202 710.3 526 67.5
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 1.5e-199 700.3 426 76.8
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.9e-198 696.0 584 58.9
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 5.2e-187 658.7 623 57.0
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 7.4e-186 654.8 581 59.4
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 3.6e-180 636.0 390 75.9
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 2.0e-159 567.0 590 52.0
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 5.9e-159 565.5 335 79.7
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 2.6e-146 523.5 583 48.9
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 3.6e-140 503.1 375 63.2
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 6.8e-131 472.2 273 79.5
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 7.1e-112 409.1 328 60.4
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.4e-91 341.7 209 72.7
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 7.2e-88 329.3 272 64.3
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.2e-87 328.6 297 57.6
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.1e-80 305.4 193 72.0
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 1.8e-75 288.1 181 68.5
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.5e-72 278.5 602 32.9
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.7e-68 263.8 178 69.1
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 8.2e-68 262.7 162 74.7
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.8e-51 208.4 197 59.9
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.8e-49 200.7 138 76.1
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-45 189.1 136 72.1
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 5.9e-42 176.8 110 69.1
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 7.8e-42 176.4 108 72.2
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 1.7e-41 175.3 91 81.3
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.6e-40 170.2 191 53.9
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 5.6e-40 170.2 103 80.6
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 1.2e-39 169.1 108 69.4
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 1.0e-38 166.0 664 25.3
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 8.9e-38 162.9 115 65.2
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 8.9e-38 162.9 511 24.9
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 1.2e-37 162.5 584 25.5
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 2.9e-36 157.9 119 59.7
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 2.0e-34 151.8 611 25.2
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 1.2e-31 142.5 328 29.9
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 3.1e-30 137.9 78 84.6
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 7.1e-27 126.7 75 70.7
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.1e-26 125.2 223 40.8
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.1e-25 120.6 79 70.9
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 3.4e-21 107.8 71 64.8
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.7e-17 95.5 132 40.9
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 1.5e-16 92.4 59 64.4
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 6.2e-15 87.0 61 68.9


User provided reference genes

Program Settings