Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.2e-98 363.2 196 100.0
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 7.3e-83 310.8 182 92.3
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 7.8e-77 290.8 201 81.6
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.1e-73 278.9 184 83.2
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.4e-71 271.2 184 81.0
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 8.9e-65 250.8 181 76.2
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.6e-64 249.2 188 75.5
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.7e-63 245.4 187 74.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 8.3e-63 244.2 181 75.1
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.1e-62 243.8 184 73.4
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.4e-62 243.4 190 70.5
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.4e-62 242.7 185 73.5
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.2e-62 242.3 181 73.5
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 3.2e-62 242.3 182 73.6
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 9.2e-62 240.7 185 70.8
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.6e-61 240.0 187 71.7
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 4.6e-61 238.4 184 72.3
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.3e-60 236.9 185 70.3
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.7e-60 236.5 184 71.7
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 3.9e-60 235.3 187 69.0
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 3.9e-60 235.3 187 69.0
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 4.3e-59 231.9 185 70.3
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 4.3e-59 231.9 181 72.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 5.6e-59 231.5 183 69.4
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 5.6e-59 231.5 182 73.6
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 7.3e-59 231.1 189 67.2
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 9.5e-59 230.7 184 71.7
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 9.5e-59 230.7 184 71.7
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.2e-58 230.3 181 71.8
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.2e-58 230.3 181 70.7
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 2.8e-58 229.2 183 68.9
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 3.6e-58 228.8 183 68.9
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 8.1e-58 227.6 185 69.2
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 8.1e-58 227.6 182 69.2
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 8.1e-58 227.6 182 71.4
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.1e-57 227.3 186 69.9
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.4e-57 226.9 189 67.7
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.2e-55 219.5 182 67.6
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 4.9e-55 218.4 182 68.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 6.4e-55 218.0 183 65.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.4e-54 216.9 186 67.2
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.9e-54 216.5 182 67.6
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 7.1e-54 214.5 151 78.1
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.6e-53 213.4 182 65.4
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 3.5e-53 212.2 184 65.2
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.0e-52 210.7 184 66.8
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.0e-52 210.7 184 66.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.0e-52 210.7 182 65.9
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.3e-52 210.3 184 64.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.3e-52 210.3 182 67.6
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.7e-52 209.9 182 68.7
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.3e-52 209.5 175 65.7
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 3.0e-52 209.1 137 78.8
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.9e-52 208.8 116 91.4
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 5.1e-52 208.4 173 66.5
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 5.1e-52 208.4 182 64.8
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 6.6e-52 208.0 184 63.6
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.6e-52 208.0 149 78.5
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 6.6e-52 208.0 181 66.3
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.1e-51 207.2 139 77.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.9e-51 206.5 137 77.4
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 3.3e-51 205.7 191 61.3
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.3e-51 205.3 116 90.5
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 5.6e-51 204.9 182 65.4
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 5.6e-51 204.9 184 62.5
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 9.6e-51 204.1 173 67.6
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 9.6e-51 204.1 182 67.0
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.2e-50 203.8 212 57.1
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 2.8e-50 202.6 185 63.8
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.8e-50 202.6 184 65.8
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.8e-50 202.6 185 61.6
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 3.6e-50 202.2 193 61.7
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.8e-49 199.9 180 65.0
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.4e-49 199.5 184 64.1
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 2.4e-49 199.5 180 65.0
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 4.0e-49 198.7 189 63.5
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 5.3e-49 198.4 184 63.0
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 5.3e-49 198.4 126 80.2
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 6.9e-49 198.0 211 56.9
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 9.0e-49 197.6 187 61.5
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.2e-48 197.2 182 63.7
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 1.5e-48 196.8 179 62.6
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.6e-48 196.1 135 74.8
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.6e-48 196.1 192 59.4
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 2.6e-48 196.1 182 62.1
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 3.4e-48 195.7 180 63.9
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.4e-48 195.3 181 60.8
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 9.9e-48 194.1 127 78.7
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.1e-46 190.7 131 74.8
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 2.4e-46 189.5 146 67.8
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.4e-46 188.3 136 72.1
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 5.4e-46 188.3 182 59.9
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 9.3e-46 187.6 131 72.5
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.2e-45 187.2 136 71.3
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.6e-45 186.8 179 62.6
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 7.8e-45 184.5 134 70.9
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.7e-44 183.3 129 78.3
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.7e-44 183.3 136 72.8
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 3.0e-44 182.6 146 71.2
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 3.0e-44 182.6 146 71.2
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 3.9e-44 182.2 136 69.9
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.6e-44 181.4 106 87.7
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 1.9e-43 179.9 135 69.6
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 9.6e-43 177.6 104 87.5
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.3e-42 177.2 198 57.6
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 4.5e-40 168.7 138 63.0
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 7.6e-40 167.9 196 52.0
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.3e-39 167.2 152 61.8
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 7.1e-38 161.4 93 88.2
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 7.9e-37 157.9 116 70.7
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.1e-35 154.1 136 62.5
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 4.8e-34 148.7 254 41.7
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 6.2e-34 148.3 184 51.6
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.4e-32 142.5 130 60.8
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 3.2e-30 136.0 202 48.5
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 6.0e-29 131.7 79 81.0
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.8e-28 130.2 73 89.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.3e-27 125.6 99 65.7
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.7e-26 122.5 91 64.8
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.1e-25 119.4 149 52.3
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.0e-23 114.4 87 62.1
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.7e-23 113.6 187 42.2
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.1e-22 110.9 90 61.1
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 9.3e-22 107.8 73 68.5
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 4.6e-21 105.5 104 56.7
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 3.0e-20 102.8 84 58.3
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.5e-19 100.5 200 37.5
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.9e-19 100.1 211 35.1
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 3.3e-19 99.4 211 34.6
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 7.4e-19 98.2 198 35.9
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.5e-14 82.0 57 73.7
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 3.0e-12 76.3 125 37.6
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 4.1e-09 65.9 51 64.7
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.2e-08 64.3 195 31.3
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 2.0e-08 63.5 44 72.7
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.6e-08 63.2 98 43.9
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.9e-07 59.7 94 47.9
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 2.9e-07 59.7 84 41.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 5.0e-07 58.9 111 45.0
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.2e-06 55.8 98 40.8


User provided reference genes

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