Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.4e-234 815.1 394 100.0
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.3e-200 703.0 394 86.0
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.5e-199 697.6 394 86.0
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.1e-198 695.7 394 85.8
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.2e-197 691.0 394 85.3
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.8e-181 639.4 394 80.7
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 7.8e-177 624.0 394 78.7
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 3.0e-168 595.5 384 76.0
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 5.1e-168 594.7 378 75.1
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 5.1e-168 594.7 375 76.8
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 2.8e-166 589.0 379 75.2
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 6.2e-166 587.8 406 70.4
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 8.9e-165 583.9 405 70.9
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 3.4e-164 582.0 375 73.3
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 4.9e-163 578.2 383 71.5
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 1.4e-162 576.6 385 71.2
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 3.2e-162 575.5 371 74.4
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 5.4e-162 574.7 395 70.1
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 7.1e-162 574.3 371 74.9
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.5e-161 572.0 399 72.7
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 3.5e-161 572.0 408 69.1
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 6.0e-161 571.2 396 69.7
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 7.8e-161 570.9 394 69.5
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.0e-160 570.5 396 69.4
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 1.3e-160 570.1 395 69.4
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 1.7e-160 569.7 396 70.2
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.7e-160 569.7 394 69.3
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 2.3e-160 569.3 392 68.4
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 6.6e-160 567.8 394 69.3
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 6.6e-160 567.8 394 69.3
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.5e-159 566.6 409 68.5
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.9e-159 566.2 435 67.6
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 1.9e-159 566.2 367 71.7
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 2.5e-159 565.8 390 70.0
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.5e-159 565.8 388 70.9
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 4.3e-159 565.1 371 71.2
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.3e-159 565.1 377 71.1
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 5.6e-159 564.7 395 68.9
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 5.6e-159 564.7 395 69.1
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 9.6e-159 563.9 384 68.8
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.2e-158 563.5 366 72.7
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.6e-158 563.1 408 67.6
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.6e-158 563.1 387 70.3
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.6e-158 562.0 395 70.1
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 4.7e-158 561.6 387 70.3
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 6.2e-158 561.2 396 69.4
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.8e-157 559.7 388 70.1
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 2.4e-157 559.3 396 69.2
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 3.1e-157 558.9 383 70.0
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.1e-157 558.9 387 69.3
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.1e-157 558.9 377 70.3
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 3.1e-157 558.9 385 70.4
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 4.0e-157 558.5 401 67.6
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 6.9e-157 557.8 377 69.5
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 6.9e-157 557.8 397 68.8
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 6.9e-157 557.8 383 70.5
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 9.0e-157 557.4 377 69.2
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 9.0e-157 557.4 403 66.7
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.2e-156 557.0 371 72.2
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 5.8e-156 554.7 389 69.9
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 5.8e-156 554.7 389 69.9
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 7.6e-156 554.3 374 70.3
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 2.9e-155 552.4 382 70.4
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 4.9e-155 551.6 396 68.4
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 8.4e-155 550.8 381 70.6
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 8.4e-155 550.8 374 70.9
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.9e-154 549.7 377 69.2
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.9e-154 549.7 371 71.4
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 2.4e-154 549.3 388 69.6
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 2.4e-154 549.3 388 69.6
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 3.2e-154 548.9 374 71.1
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 7.1e-154 547.7 382 69.6
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.3e-154 547.4 381 70.6
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 9.3e-154 547.4 378 69.0
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 3.5e-153 545.4 397 66.8
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 3.5e-153 545.4 389 66.8
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 6.0e-153 544.7 376 69.7
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 7.8e-153 544.3 378 69.8
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 3.9e-152 542.0 383 69.2
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 7.3e-151 537.7 392 65.3
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.6e-150 536.6 370 70.8
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 3.6e-150 535.4 367 68.4
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 8.1e-150 534.3 374 69.5
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 4.5e-148 528.5 387 67.2
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.3e-147 526.9 376 68.6
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 4.9e-147 525.0 379 65.7
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 6.4e-147 524.6 381 67.5
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 6.4e-147 524.6 382 67.3
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 4.2e-146 521.9 370 67.3
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.6e-145 518.5 381 64.8
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 4.6e-145 518.5 402 62.2
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 1.0e-144 517.3 364 66.8
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.5e-143 513.5 381 67.5
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 1.3e-142 510.4 352 69.6
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 3.7e-142 508.8 393 67.7
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 5.8e-140 501.5 368 64.9
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.2e-139 499.6 378 64.3
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.9e-138 496.5 442 56.3
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.6e-137 491.9 370 64.3
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.5e-135 486.9 394 60.2
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 4.3e-135 485.3 384 62.2
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 3.4e-132 475.7 349 67.9
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 3.4e-132 475.7 388 61.9
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.0e-131 474.2 399 58.6
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.3e-131 473.8 399 58.6
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 4.9e-131 471.9 382 61.3
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 4.1e-125 452.2 367 59.9
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.9e-123 446.0 380 57.6
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.9e-119 433.3 378 56.9
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 4.8e-118 428.7 291 69.8
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 8.2e-118 427.9 286 69.2
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.1e-117 427.6 286 69.2
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.0e-116 423.3 370 54.9
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 8.5e-115 417.9 378 57.9
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 8.5e-115 417.9 262 74.4
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 4.7e-113 412.1 374 52.7
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.0e-112 411.0 263 78.7
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 3.3e-111 406.0 256 72.3
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 3.1e-109 399.4 615 39.7
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.1e-109 399.1 367 54.2
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 2.0e-108 396.7 378 52.1
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 5.9e-108 395.2 371 56.3
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 5.0e-107 392.1 266 68.4
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.1e-101 374.4 378 52.4
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 7.0e-101 371.7 253 68.4
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.6e-100 369.8 365 48.5
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 6.5e-99 365.2 247 68.0
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.1e-98 364.4 246 67.9
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 9.4e-98 361.3 241 68.9
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.5e-95 354.0 244 66.4
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 2.7e-92 343.2 401 45.4
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 2.2e-91 340.1 245 68.2
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 3.8e-91 339.3 265 65.3
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.2e-84 317.8 360 47.5
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.3e-83 313.5 299 59.9
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 4.2e-82 309.3 192 74.0
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 7.3e-66 255.4 158 74.1
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 6.4e-62 242.3 168 72.0
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 8.6e-59 231.9 208 53.4
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.8e-49 200.3 130 73.1
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.2e-47 194.9 226 50.4
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.1e-41 174.1 114 69.3
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 1.8e-40 171.0 404 32.7
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 2.4e-37 160.6 125 64.0
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 6.0e-36 156.0 106 67.9
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 8.1e-33 145.6 174 47.1
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.4e-32 144.8 364 28.3
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.9e-29 134.4 293 32.1
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 4.3e-26 123.2 102 56.9
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 4.2e-21 106.7 70 64.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 7.1e-21 105.9 92 58.7
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 2.3e-19 100.9 92 55.4
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 3.0e-19 100.5 288 27.1
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.5e-18 97.4 92 54.3
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.3e-17 95.1 93 49.5
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.5e-15 88.2 381 24.1
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-10 71.2 51 62.7
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-10 71.2 53 58.5
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 2.8e-09 67.4 54 57.4
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 2.0e-07 61.2 59 49.2


User provided reference genes

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