Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 4.8e-111 404.4 195 100.0
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 7.6e-32 141.4 126 53.2
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 2.9e-31 139.4 120 60.0
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 2.9e-31 139.4 120 60.0
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 4.9e-31 138.7 120 58.3
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 3.2e-30 136.0 119 56.3
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 4.2e-30 135.6 120 57.5
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 9.3e-30 134.4 114 53.5
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.1e-29 133.3 118 50.8
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 4.6e-29 132.1 120 55.8
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 6.0e-29 131.7 113 57.5
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 7.8e-29 131.3 115 58.3
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 1.3e-28 130.6 124 49.2
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.3e-28 130.6 124 50.0
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 3.9e-28 129.0 111 57.7
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 3.9e-28 129.0 134 44.0
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 3.9e-28 129.0 124 46.0
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 5.1e-28 128.6 146 52.7
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.6e-28 128.3 111 52.3
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.6e-28 128.3 111 52.3
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 6.6e-28 128.3 112 57.1
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 1.1e-27 127.5 118 47.5
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 1.9e-27 126.7 111 48.6
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 2.5e-27 126.3 127 55.9
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 2.5e-27 126.3 121 55.4
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-27 126.3 120 54.2
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 2.5e-27 126.3 120 54.2
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 3.3e-27 125.9 111 48.6
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 3.3e-27 125.9 121 55.4
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 3.3e-27 125.9 141 41.8
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 3.3e-27 125.9 114 48.2
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 5.6e-27 125.2 115 53.0
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.6e-27 125.2 111 50.5
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 5.6e-27 125.2 121 55.4
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 7.3e-27 124.8 120 53.3
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.6e-26 123.6 110 48.2
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 2.1e-26 123.2 116 56.0
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 2.8e-26 122.9 110 50.9
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 2.8e-26 122.9 110 50.9
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.8e-26 122.9 111 55.9
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 3.6e-26 122.5 114 53.5
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 3.6e-26 122.5 118 46.6
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.6e-26 122.5 125 48.0
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 4.8e-26 122.1 125 47.2
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 4.8e-26 122.1 110 50.9
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 4.8e-26 122.1 123 53.7
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 6.2e-26 121.7 116 49.1
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 8.1e-26 121.3 111 54.1
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.8e-25 120.2 111 49.5
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-25 120.2 130 50.0
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 4.0e-25 119.0 116 52.6
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-24 117.5 113 52.2
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-24 117.5 113 52.2
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 1.2e-24 117.5 113 52.2
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-24 117.1 108 52.8
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 1.5e-24 117.1 130 49.2
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.5e-24 117.1 112 49.1
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 2.6e-24 116.3 109 48.6
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 3.4e-24 115.9 116 51.7
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 4.5e-24 115.5 109 48.6
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 4.5e-24 115.5 109 48.6
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 4.5e-24 115.5 113 52.2
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 5.8e-24 115.2 116 51.7
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 5.8e-24 115.2 121 49.6
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 5.8e-24 115.2 120 51.7
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 5.8e-24 115.2 121 49.6
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 5.8e-24 115.2 121 49.6
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 5.8e-24 115.2 108 48.1
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.8e-24 115.2 105 48.6
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 7.6e-24 114.8 104 52.9
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 7.6e-24 114.8 104 52.9
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 7.6e-24 114.8 104 52.9
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 7.6e-24 114.8 104 52.9
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 9.9e-24 114.4 114 53.5
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-23 114.0 104 51.0
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 1.3e-23 114.0 114 51.8
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 1.7e-23 113.6 111 47.7
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 2.2e-23 113.2 103 54.4
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 2.2e-23 113.2 116 50.9
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 2.2e-23 113.2 103 54.4
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 2.9e-23 112.8 114 52.6
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 3.8e-23 112.5 103 49.5
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 4.9e-23 112.1 118 50.0
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.9e-23 112.1 99 49.5
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 6.4e-23 111.7 120 50.0
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.4e-22 110.5 120 42.5
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.4e-22 110.5 119 43.7
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-22 110.5 114 50.9
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.4e-22 109.8 111 43.2
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.4e-22 109.8 129 38.8
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 4.2e-22 109.0 122 42.6
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 4.2e-22 109.0 114 50.0
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 7.1e-22 108.2 114 50.0
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 7.1e-22 108.2 144 41.0
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 7.1e-22 108.2 101 48.5
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 6.0e-21 105.1 131 41.2
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 7.9e-21 104.8 104 49.0
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 7.9e-21 104.8 104 49.0
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.0e-20 102.8 96 56.2
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 8.7e-20 101.3 106 48.1
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.9e-19 100.1 115 45.2
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.9e-19 100.1 106 46.2
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 2.1e-18 96.7 114 41.2
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.1e-18 96.7 109 45.0
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 2.8e-18 96.3 121 46.3
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 8.1e-18 94.7 114 40.4
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 8.1e-18 94.7 114 40.4
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 8.1e-18 94.7 141 36.9
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 8.1e-18 94.7 114 40.4
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 1.1e-17 94.4 96 53.1
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 1.1e-17 94.4 104 43.3
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-17 93.6 101 49.5
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.1e-17 92.8 121 40.5
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 4.0e-17 92.4 119 44.5
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 5.3e-17 92.0 106 44.3
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 9.0e-17 91.3 109 46.8
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 9.0e-17 91.3 109 46.8
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 9.0e-17 91.3 115 44.3
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 9.0e-17 91.3 115 44.3
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-16 90.9 133 42.1
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-16 90.9 88 52.3
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 1.2e-16 90.9 141 36.2
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.2e-16 90.9 83 49.4
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 1.5e-16 90.5 94 52.1
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 3.4e-16 89.4 98 49.0
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 3.4e-16 89.4 98 49.0
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 4.5e-16 89.0 115 40.9
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 4.5e-16 89.0 115 40.9
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 4.5e-16 89.0 73 50.7
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.5e-16 89.0 106 41.5
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 5.8e-16 88.6 109 44.0
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 7.6e-16 88.2 108 42.6
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.3e-15 87.4 132 37.1
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.3e-15 87.4 152 33.6
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 1.7e-15 87.0 157 38.2
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 3.8e-15 85.9 102 47.1
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 4.9e-15 85.5 128 41.4
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-14 84.3 104 39.4
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-14 84.3 104 39.4
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 2.4e-14 83.2 128 35.9
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 2.4e-14 83.2 129 36.4
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 7.1e-14 81.6 104 42.3
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 7.1e-14 81.6 104 42.3
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 3.5e-13 79.3 105 42.9
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.3e-12 77.4 66 53.0
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 1.8e-12 77.0 103 39.8
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 3.3e-11 72.8 100 37.0
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 1.6e-10 70.5 99 34.3
PGSC0003DMG400004806 Solanum tuberosum HOM05D008086 ORTHO05D010560 3.7e-10 69.3 99 34.3
CAN.G1218.23 Capsicum annuum HOM05D008086 ORTHO05D010560 6.2e-10 68.6 99 33.3
Peaxi162Scf00002g01721 Petunia axillaris HOM05D008086 ORTHO05D010560 8.2e-10 68.2 104 32.7
Solyc08g078720.3 Solanum lycopersicum HOM05D008086 ORTHO05D010560 8.2e-10 68.2 99 33.3
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-09 67.8 101 35.6
QL12p012439 Quercus lobata HOM05D001099 ORTHO05D000958 1.1e-09 67.8 117 32.5
PGSC0003DMG400004807 Solanum tuberosum HOM05D001099 ORTHO05D010560 1.8e-09 67.0 102 35.3
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 2.4e-09 66.6 102 35.3
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 2.4e-09 66.6 113 34.5
Nitab4.5_0007598g0030 Nicotiana tabacum HOM05D001099 ORTHO05D000958 9.0e-09 64.7 102 35.3
Nitab4.5_0008481g0040 Nicotiana tabacum HOM05D008086 ORTHO05D010560 1.2e-08 64.3 95 32.6
Solyc08g078710.3 Solanum lycopersicum HOM05D001099 ORTHO05D010560 2.6e-08 63.2 102 35.3
BolC7t45323H Brassica oleracea HOM05D007337 ORTHO05D004972 5.8e-08 62.0 88 42.0
Cc08_g12570 Coffea canephora HOM05D001099 ORTHO05D010560 5.8e-08 62.0 102 33.3
Dinv39137 Davidia involucrata HOM05D001099 ORTHO05D010560 7.6e-08 61.6 102 31.4
Dinv39136 Davidia involucrata HOM05D001099 ORTHO05D000958 2.2e-07 60.1 95 32.6
CAN.G1218.24 Capsicum annuum HOM05D001099 ORTHO05D000958 3.8e-07 59.3 102 34.3
AUR62039961 Chenopodium quinoa HOM05D025303 ORTHO05D015279 8.4e-07 58.2 115 33.0
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.2e-06 56.2 125 32.0
MELO3C013946.2 Cucumis melo HOM05D001099 ORTHO05D000958 3.2e-06 56.2 85 31.8
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 4.2e-06 55.8 103 30.1
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 4.2e-06 55.8 103 30.1
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 4.2e-06 55.8 103 30.1
ClCG10G002740 Citrullus lanatus HOM05D001099 ORTHO05D000958 4.2e-06 55.8 85 31.8
Cfa012707 Carpinus fangiana HOM05D001099 ORTHO05D000958 7.1e-06 55.1 110 32.7
CsaV3_3G002780 Cucumis sativus L. HOM05D001099 ORTHO05D000958 7.1e-06 55.1 81 33.3
CDE03G0474 Ceratophyllum demersum HOM05D001099 ORTHO05D000958 9.3e-06 54.7 87 34.5
AUR62007508 Chenopodium quinoa HOM05D025303 ORTHO05D015279 9.3e-06 54.7 97 35.1
ClCG04G005380 Citrullus lanatus HOM05D001099 ORTHO05D000958 9.3e-06 54.7 85 31.8


User provided reference genes

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