Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 2.3e-24 114.8 58 100.0
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 1.1e-23 112.5 58 94.8
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 1.9e-23 111.7 58 94.8
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 5.6e-23 110.2 58 93.1
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 5.6e-23 110.2 58 93.1
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 7.3e-23 109.8 58 93.1
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 9.5e-23 109.4 58 91.4
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 3.1e-21 104.4 58 86.2
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 3.1e-21 104.4 58 87.9
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 6.8e-21 103.2 58 86.2
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 6.8e-21 103.2 58 87.9
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 2.0e-20 101.7 58 86.2
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 2.0e-20 101.7 59 84.7
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 2.0e-20 101.7 54 88.9
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 3.4e-20 100.9 52 92.3
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 3.4e-20 100.9 58 87.9
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 4.4e-20 100.5 58 84.5
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 4.4e-20 100.5 58 84.5
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 4.4e-20 100.5 52 92.3
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 5.8e-20 100.1 54 88.9
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 5.8e-20 100.1 58 84.5
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 7.5e-20 99.8 52 92.3
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 7.5e-20 99.8 58 86.2
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 7.5e-20 99.8 52 92.3
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 9.8e-20 99.4 52 88.5
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 2.2e-19 98.2 52 90.4
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 3.7e-19 97.4 52 90.4
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 3.7e-19 97.4 56 85.7
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 4.9e-19 97.1 52 86.5
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 4.9e-19 97.1 52 86.5
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 4.9e-19 97.1 59 79.7
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 4.9e-19 97.1 52 88.5
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 8.3e-19 96.3 52 86.5
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 1.1e-18 95.9 52 84.6
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 1.4e-18 95.5 52 90.4
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 3.2e-18 94.4 52 86.5
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 3.2e-18 94.4 53 83.0
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 4.1e-18 94.0 53 84.9
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 4.1e-18 94.0 52 80.8
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 4.1e-18 94.0 57 80.7
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 5.4e-18 93.6 59 84.7
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 5.4e-18 93.6 52 86.5
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 7.0e-18 93.2 52 84.6
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 7.0e-18 93.2 53 88.7
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 7.0e-18 93.2 52 84.6
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 1.2e-17 92.4 50 84.0
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 2.0e-17 91.7 52 82.7
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 2.0e-17 91.7 60 73.3
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 2.7e-17 91.3 52 80.8
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 2.7e-17 91.3 58 77.6
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 3.5e-17 90.9 52 82.7
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 3.5e-17 90.9 52 82.7
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 7.8e-17 89.7 57 82.5
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 1.0e-16 89.4 47 93.6
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 1.0e-16 89.4 53 81.1
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 1.3e-16 89.0 52 78.8
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 1.3e-16 89.0 53 79.2
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 1.7e-16 88.6 61 78.7
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 1.7e-16 88.6 47 85.1
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 2.3e-16 88.2 52 82.7
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 6.6e-16 86.7 53 83.0
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 8.6e-16 86.3 50 80.0
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 8.6e-16 86.3 50 80.0
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 1.1e-15 85.9 55 74.5
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 1.1e-15 85.9 53 81.1
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 2.5e-15 84.7 49 77.6
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 3.3e-15 84.3 52 80.8
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 3.3e-15 84.3 52 80.8
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 3.3e-15 84.3 58 74.1
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 4.3e-15 84.0 46 84.8
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 1.2e-14 82.4 44 88.6
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 1.2e-14 82.4 45 82.2
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 1.6e-14 82.0 52 73.1
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 2.1e-14 81.6 45 82.2
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 2.1e-14 81.6 58 70.7
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 3.6e-14 80.9 47 78.7
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 4.7e-14 80.5 54 72.2
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 8.1e-14 79.7 48 75.0
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.1e-13 77.8 50 78.0
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.1e-13 77.8 50 78.0
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 4.0e-13 77.4 52 76.9
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 6.8e-13 76.6 45 82.2
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 2.9e-11 71.2 52 69.2
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 2.4e-10 68.2 53 62.3
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 2.4e-10 68.2 38 89.5
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 2.7e-09 64.7 46 67.4
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 3.0e-08 61.2 31 93.5
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 1.1e-07 59.3 31 90.3
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 1.9e-07 58.5 57 54.4
Atru.chr1.372 Acer truncatum HOM05D007712 ORTHO05D009755 3.6e-06 54.3 32 84.4
Atru.chr2.3306 Acer truncatum HOM05D007712 ORTHO05D009755 3.6e-06 54.3 32 84.4


User provided reference genes

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