Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G243500 Theobroma cacao HOM05D006859 ORTHO05D007990 3.6e-130 468.4 260 100.0
Duzib205G1414 Durio zibethinus HOM05D006859 ORTHO05D007990 1.3e-95 353.6 242 83.5
Duzib068G0861 Durio zibethinus HOM05D006859 ORTHO05D007990 3.5e-93 345.5 243 80.7
Gorai.004G193900 Gossypium raimondii HOM05D006859 ORTHO05D007990 6.7e-92 341.3 243 78.6
Gohir.D08G184600 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.1e-91 340.5 243 78.2
Gohir.A08G165800 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.3e-90 337.0 243 78.2
Prupe.5G059200 Prunus persica HOM05D006859 ORTHO05D007990 7.2e-70 268.1 244 66.0
QL12p009356 Quercus lobata HOM05D006859 ORTHO05D007990 4.6e-69 265.4 246 64.6
Cfa012667 Carpinus fangiana HOM05D006859 ORTHO05D007990 4.8e-66 255.4 262 60.7
Potri.003G082200 Populus trichocarpa HOM05D006859 ORTHO05D007990 8.2e-66 254.6 235 62.6
PGR031G1874 Punica granatum HOM05D006859 ORTHO05D007990 2.4e-65 253.1 228 66.7
RcHm_v2.0_Chr7g0205091 Rosa chinensis HOM05D006859 ORTHO05D007990 3.4e-64 249.2 251 59.4
Dinv28858 Davidia involucrata HOM05D006859 ORTHO05D007990 2.2e-63 246.5 243 62.6
Sabra03G0053000 Salix brachista HOM05D006859 ORTHO05D007990 2.2e-63 246.5 247 60.3
FvH4_5g20140 Fragaria vesca HOM05D006859 ORTHO05D007990 4.2e-62 242.3 239 60.7
FAN04G1798 Fragaria x ananassa HOM05D006859 ORTHO05D007990 4.2e-62 242.3 247 59.5
FAN18G2706 Fragaria x ananassa HOM05D006859 ORTHO05D007990 1.2e-61 240.7 239 60.7
CSS0046225 Camellia sinensis var. sinensis HOM05D006859 ORTHO05D007990 1.6e-61 240.4 222 64.4
FAN08G0582 Fragaria x ananassa HOM05D006859 ORTHO05D007990 2.7e-61 239.6 239 60.7
TWI15G0070 Tripterygium wilfordii HOM05D006859 ORTHO05D007990 3.6e-61 239.2 243 60.5
Cpa.g.sc89.10 Carica papaya HOM05D006859 ORTHO05D007990 7.9e-61 238.0 254 60.2
Eucgr.D02124 Eucalyptus grandis HOM05D006859 ORTHO05D007990 1.8e-60 236.9 244 59.0
Actinidia25901 Actinidia chinensis HOM05D006859 ORTHO05D007990 2.3e-60 236.5 239 62.3
Atru.chr9.1231 Acer truncatum HOM05D006859 ORTHO05D007990 6.7e-60 235.0 245 60.0
RhsimUnG0092900 Rhododendron simsii HOM05D006859 ORTHO05D007990 1.1e-59 234.2 238 60.5
CANSAT21G2559 Cannabis sativa HOM05D006859 ORTHO05D007990 2.6e-59 233.0 246 57.7
MD00G1165000 Malus domestica HOM05D006859 ORTHO05D007990 5.7e-59 231.9 235 61.7
TPR.G31422 Trifolium pratense HOM05D006859 ORTHO05D007990 9.7e-59 231.1 213 67.6
vmacro00041 Vaccinium macrocarpon HOM05D006859 ORTHO05D007990 1.3e-58 230.7 234 60.7
Phvul.002G001000 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 2.4e-57 226.5 222 63.1
Cc08_g11510 Coffea canephora HOM05D006859 ORTHO05D007990 1.2e-56 224.2 243 58.0
Sc01g0008110 Simmondsia chinensis HOM05D006859 ORTHO05D007990 2.0e-56 223.4 241 56.0
Psat2g176200 Pisum sativum HOM05D006859 ORTHO05D007990 2.9e-55 219.5 211 64.9
Medtr5g013280 Medicago truncatula HOM05D006859 ORTHO05D007990 1.1e-54 217.6 213 64.3
CiPaw.11G069300 Carya illinoinensis HOM05D006859 ORTHO05D007990 1.4e-54 217.2 185 65.4
Lj2g0014108 Lotus japonicus HOM05D006859 ORTHO05D007990 1.4e-54 217.2 243 60.1
Gorai.003G177100 Gossypium raimondii HOM05D006859 ORTHO05D007990 2.5e-54 216.5 186 62.9
VMungo1215G2710 Vigna mungo HOM05D006859 ORTHO05D007990 4.2e-54 215.7 222 61.7
MD04G1050900 Malus domestica HOM05D006859 ORTHO05D007990 7.2e-54 214.9 219 63.0
Manes.01G086700 Manihot esculenta HOM05D006859 ORTHO05D007990 7.2e-54 214.9 237 56.5
Ciclev10021440m.g Citrus clementina HOM05D006859 ORTHO05D007990 1.2e-53 214.2 243 53.5
Aqoxy7G00861 Aquilegia oxysepala HOM05D006859 ORTHO05D007990 1.6e-53 213.8 220 57.7
Gohir.A03G005200 Gossypium hirsutum HOM05D006859 ORTHO05D007990 2.1e-53 213.4 191 66.0
Gohir.D03G167400 Gossypium hirsutum HOM05D006859 ORTHO05D007990 2.1e-53 213.4 186 67.2
TAR636G0545 Trochodendron aralioides HOM05D006859 ORTHO05D007990 2.1e-53 213.4 222 61.7
MELO3C003330.2 Cucumis melo HOM05D006859 ORTHO05D007990 1.8e-52 210.3 239 53.6
Lalb_Chr16g0379391 Lupinus albus HOM05D006859 ORTHO05D007990 1.8e-52 210.3 234 58.5
Oeu017213.1 Olea europaea HOM05D006859 ORTHO05D007990 3.0e-52 209.5 219 57.5
Hund11327 Selenicereus undatus HOM05D006859 ORTHO05D007990 4.4e-51 205.7 246 55.3
EL10Ac5g12291 Beta vulgaris HOM05D006859 ORTHO05D007990 5.7e-51 205.3 240 57.5
PSO675G5712 Papaver somniferum HOM05D006859 ORTHO05D007990 1.3e-50 204.1 242 53.7
Nn1g00823 Nelumbo nucifera HOM05D006859 ORTHO05D007990 1.7e-50 203.8 221 61.5
PSO717G0098 Papaver somniferum HOM05D006859 ORTHO05D007990 4.8e-50 202.2 236 54.2
arahy.Tifrunner.gnm1.ann1.B2NILF Arachis hypogaea HOM05D006859 ORTHO05D007990 2.4e-49 199.9 260 53.5
arahy.Tifrunner.gnm1.ann1.WYE05V Arachis hypogaea HOM05D006859 ORTHO05D007990 2.4e-49 199.9 260 53.5
Glyma.01G205600 Glycine max HOM05D006859 ORTHO05D007990 1.0e-47 194.5 222 59.0
Nitab4.5_0000506g0100 Nicotiana tabacum HOM05D006859 ORTHO05D007990 2.9e-47 193.0 222 57.7
MBI04_g28364_MAGBIO Magnolia biondii HOM05D006859 ORTHO05D007990 4.2e-46 189.1 222 57.7
Migut.A01048 Erythranthe guttata HOM05D006859 ORTHO05D007990 9.4e-46 188.0 223 55.2
Sopen06g021040 Solanum pennellii HOM05D006859 ORTHO05D007990 2.1e-45 186.8 237 55.3
Nitab4.5_0003456g0040 Nicotiana tabacum HOM05D006859 ORTHO05D007990 3.6e-45 186.0 255 52.2
PGSC0003DMG400024153 Solanum tuberosum HOM05D006859 ORTHO05D007990 6.1e-45 185.3 241 53.9
HanXRQChr06g0164541 Helianthus annuus HOM05D006859 ORTHO05D007990 5.7e-43 178.7 230 53.9
ECA236G3610 Erigeron canadensis HOM05D006859 ORTHO05D007990 7.5e-43 178.3 220 54.5
Lj2C227G12 Lonicera japonica HOM05D006859 ORTHO05D007990 3.1e-41 172.9 181 61.9
Actinidia02186 Actinidia chinensis HOM05D006859 ORTHO05D007990 5.3e-41 172.2 205 57.1
CDE11G0841 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 7.0e-41 171.8 228 53.9
Ca_24604_v3 Cicer arietinum L. HOM05D006859 ORTHO05D007990 4.5e-40 169.1 214 52.3
Lsat_1_v5_gn_1_53480 Lactuca sativa HOM05D006859 ORTHO05D007990 5.9e-40 168.7 226 50.4
SalBow6G1554 Salvia bowleyana HOM05D006859 ORTHO05D007990 1.1e-38 164.5 228 52.6
CsaV3_3G049860 Cucumis sativus L. HOM05D006859 ORTHO05D007990 2.5e-38 163.3 241 46.1
HPP92_014892 Vanilla planifolia HOM05D006859 ORTHO05D007990 4.7e-37 159.1 219 50.7
Carub.0007s2385 Capsella rubella HOM05D006859 ORTHO05D007990 5.2e-36 155.6 238 45.4
ATR0665G206 Amborella trichopoda HOM05D006859 ORTHO05D007990 1.2e-35 154.5 223 52.0
Thhalv10025654m.g Eutrema salsugineum HOM05D006859 ORTHO05D007990 2.0e-35 153.7 218 48.2
AT4G17540 Arabidopsis thaliana HOM05D006859 ORTHO05D007990 5.7e-35 152.1 238 45.0
Sp7g16620 Schrenkiella parvula HOM05D006859 ORTHO05D007990 1.3e-34 151.0 243 44.0
AUR62018861 Chenopodium quinoa HOM05D006859 ORTHO05D007990 6.3e-34 148.7 182 52.2
ClCG09G012800 Citrullus lanatus HOM05D006859 ORTHO05D007990 1.8e-33 147.1 244 42.6
BcaNung00082 Brassica carinata HOM05D006859 ORTHO05D007990 3.1e-33 146.4 236 44.1
A01p09620 Brassica napus HOM05D006859 ORTHO05D007990 3.1e-33 146.4 222 46.4
BraA01t00904Z Brassica rapa HOM05D006859 ORTHO05D007990 9.1e-33 144.8 222 45.9
C01p11190 Brassica napus HOM05D006859 ORTHO05D007990 1.2e-32 144.4 213 47.9
Glyma.11G037300 Glycine max HOM05D006859 ORTHO05D007990 1.2e-32 144.4 186 47.8
CARHR224240 Cardamine hirsuta HOM05D006859 ORTHO05D007990 1.6e-32 144.1 242 45.9
unitig_8.g3018 Utricularia gibba HOM05D000481 ORTHO05D007990 1.6e-32 144.1 248 46.0
BolC1t01085H Brassica oleracea HOM05D006859 ORTHO05D007990 3.5e-32 142.9 213 47.4
SGA_v2.0_scaffold199G41240 Striga asiatica HOM05D006859 ORTHO05D007990 3.5e-32 142.9 239 42.7
Zm00001eb391020 Zea mays HOM05D006859 ORTHO05D007990 5.9e-32 142.1 212 52.8
BcaC09g51632 Brassica carinata HOM05D006859 ORTHO05D007990 7.7e-32 141.7 213 46.9
Os10g0563400 Oryza sativa ssp. japonica HOM05D006859 ORTHO05D007990 2.9e-31 139.8 214 51.9
Hma1.2p1_0840F.1_g226470 Hydrangea macrophylla HOM05D006859 ORTHO05D007990 8.6e-31 138.3 180 45.0
Solyc06g060890.4 Solanum lycopersicum HOM05D006859 ORTHO05D007990 1.5e-30 137.5 184 51.1
THA.LOC104798356 Tarenaya hassleriana HOM05D006859 ORTHO05D007990 3.3e-30 136.3 236 44.1
DCAR_004596 Daucus carota HOM05D006859 ORTHO05D007990 4.2e-30 136.0 187 51.3
COL.COLO4_21682 Corchorus olitorius HOM05D006859 ORTHO05D007990 1.6e-29 134.0 107 65.4
GSVIVG01007347001 Vitis vinifera HOM05D006859 ORTHO05D007990 1.4e-28 131.0 79 87.3
AL7G37080 Arabidopsis lyrata HOM05D006859 ORTHO05D007990 1.0e-20 104.8 180 41.7
AUR62007150 Chenopodium quinoa HOM05D006859 ORTHO05D007990 4.0e-20 102.8 164 43.9
Aa31LG6G280 Aethionema arabicum HOM05D006859 ORTHO05D007990 1.5e-19 100.9 202 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2564 Anthoceros agrestis HOM05D006859 ORTHO05D007990 2.0e-19 100.5 194 40.2
CAN.G62.4 Capsicum annuum HOM05D006859 ORTHO05D007990 1.7e-18 97.4 132 43.2
Mapoly0075s0082 Marchantia polymorpha HOM05D006859 ORTHO05D007990 1.1e-17 94.7 140 55.0
Ah.07g199030 Amaranthus hybridus HOM05D006859 ORTHO05D007990 3.2e-17 93.2 61 80.3
Peaxi162Scf00190g00099 Petunia axillaris HOM05D006859 ORTHO05D007990 2.7e-16 90.1 143 41.3
PSO717G0090 Papaver somniferum HOM05D006859 ORTHO05D007990 1.4e-12 77.8 228 32.9
Sed0000052 Sechium edule HOM05D006859 ORTHO05D007990 1.2e-11 74.7 116 38.8
Phvul.002G001100 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 1.4e-09 67.8 127 41.7
Pp3c27_6080 Physcomitrium patens HOM05D006859 ORTHO05D007990 2.4e-09 67.0 115 49.6
Glyma.11G037400 Glycine max HOM05D006859 ORTHO05D007990 3.2e-09 66.6 137 35.0
DCAR_008336 Daucus carota HOM05D002294 ORTHO05D002367 4.1e-09 66.2 195 29.2
CDE11G0285 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 5.4e-09 65.9 91 50.5
VMungo1215G2895 Vigna mungo HOM05D006859 ORTHO05D007990 3.5e-08 63.2 129 35.7
Oeu040677.2 Olea europaea HOM05D006859 ORTHO05D007990 1.7e-07 60.8 119 30.3
Glyma.01G205500 Glycine max HOM05D006859 ORTHO05D007990 5.0e-07 59.3 206 28.6


User provided reference genes

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