Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G241600 Theobroma cacao HOM05D000480 ORTHO05D000313 1.1e-122 443.4 227 100.0
Thecc.03G241400 Theobroma cacao HOM05D000480 ORTHO05D000313 3.6e-41 172.6 268 47.4
Gohir.A12G213100 Gossypium hirsutum HOM05D000480 ORTHO05D000313 1.8e-37 160.2 303 40.9
Gohir.D12G215600 Gossypium hirsutum HOM05D000480 ORTHO05D000313 7.0e-37 158.3 303 40.6
Gorai.003G178500 Gossypium raimondii HOM05D000480 ORTHO05D000313 2.1e-25 120.2 212 41.0
Gorai.008G231200 Gossypium raimondii HOM05D000480 ORTHO05D000313 6.8e-24 115.2 203 41.4
Atru.chr11.181 Acer truncatum HOM05D000480 ORTHO05D000313 1.3e-22 110.9 304 31.6
Duzib205G0304 Durio zibethinus HOM05D000480 ORTHO05D000313 8.3e-22 108.2 229 37.1
Eucgr.H05145 Eucalyptus grandis HOM05D000480 ORTHO05D000313 8.3e-22 108.2 210 37.1
Duzib205G1806 Durio zibethinus HOM05D000480 ORTHO05D000313 1.1e-21 107.8 228 37.3
Gohir.D03G168550 Gossypium hirsutum HOM05D000480 ORTHO05D000313 2.0e-20 103.6 283 32.5
Thecc.03G241100 Theobroma cacao HOM05D000480 ORTHO05D000313 9.5e-18 94.7 225 32.9
Gohir.A03G003850 Gossypium hirsutum HOM05D000480 ORTHO05D000313 2.1e-17 93.6 188 38.8
BcaNung03735 Brassica carinata HOM05D000480 ORTHO05D000313 1.4e-16 90.9 189 32.8
Eucgr.H05144 Eucalyptus grandis HOM05D000480 ORTHO05D000313 4.0e-16 89.4 194 33.5
Dinv25265 Davidia involucrata HOM05D000480 ORTHO05D000313 2.9e-14 83.2 281 29.2
BcaC03g14172 Brassica carinata HOM05D000480 ORTHO05D000313 1.4e-13 80.9 212 30.2
C02p14460 Brassica napus HOM05D000480 ORTHO05D000313 1.4e-13 80.9 212 30.2
BolC2t07571H Brassica oleracea HOM05D000480 ORTHO05D000313 1.4e-13 80.9 212 30.2
Dinv25125 Davidia involucrata HOM05D000480 ORTHO05D000313 1.4e-13 80.9 193 30.1
A06p34460 Brassica napus HOM05D000480 ORTHO05D000313 2.4e-13 80.1 195 31.8
BraA06t26374Z Brassica rapa HOM05D000480 ORTHO05D000313 2.4e-13 80.1 195 31.8
CARHR255620 Cardamine hirsuta HOM05D000480 ORTHO05D000313 4.1e-13 79.3 195 28.2
Haze_08385 Corylus avellana HOM05D000480 ORTHO05D000313 7.0e-13 78.6 194 30.9
Dinv25126 Davidia involucrata HOM05D000480 ORTHO05D000313 7.0e-13 78.6 194 30.4
BcaB05g22330 Brassica carinata HOM05D000480 ORTHO05D000313 9.2e-13 78.2 196 29.1
BraA09t36340Z Brassica rapa HOM05D000480 ORTHO05D000313 1.6e-12 77.4 195 30.8
Cc00_g18020 Coffea canephora HOM05D000480 ORTHO05D000313 2.0e-12 77.0 195 32.8
Dinv01568 Davidia involucrata HOM05D000480 ORTHO05D000313 2.0e-12 77.0 296 26.4
Dinv25121 Davidia involucrata HOM05D000480 ORTHO05D000313 2.0e-12 77.0 158 34.8
Thhalv10028610m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 2.0e-12 77.0 291 29.6
Manes.01G088000 Manihot esculenta HOM05D000480 ORTHO05D000313 2.7e-12 76.6 291 28.9
BraA09t41900Z Brassica rapa HOM05D000480 ORTHO05D000313 3.5e-12 76.3 215 29.8
Dinv25131 Davidia involucrata HOM05D000480 ORTHO05D000313 3.5e-12 76.3 170 32.4
BcaC03g16380 Brassica carinata HOM05D000480 ORTHO05D000313 4.6e-12 75.9 186 32.3
BcaC07g41900 Brassica carinata HOM05D000480 ORTHO05D000313 5.9e-12 75.5 215 30.2
Cc01_g07190 Coffea canephora HOM05D000480 ORTHO05D000313 7.8e-12 75.1 192 31.2
Dinv25130 Davidia involucrata HOM05D000480 ORTHO05D000313 7.8e-12 75.1 302 28.1
Dinv25133 Davidia involucrata HOM05D002840 ORTHO05D003088 7.8e-12 75.1 239 29.7
Hma1.2p1_2411F.1_g321610 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 1.0e-11 74.7 302 27.2
BolC8t52491H Brassica oleracea HOM05D000480 ORTHO05D000313 1.3e-11 74.3 215 29.8
Ciclev10019837m.g Citrus clementina HOM05D000480 ORTHO05D000313 1.3e-11 74.3 231 28.1
Dinv25120 Davidia involucrata HOM05D000480 ORTHO05D000313 1.3e-11 74.3 299 25.8
Dinv25163 Davidia involucrata HOM05D000480 ORTHO05D000313 1.3e-11 74.3 206 30.1
Dinv25166 Davidia involucrata HOM05D000480 ORTHO05D000313 1.3e-11 74.3 338 26.3
Thhalv10028682m.g Eutrema salsugineum HOM05D000480 ORTHO05D000313 1.3e-11 74.3 208 29.8
Hma1.2p1_1439F.1_g283470 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 1.3e-11 74.3 204 30.4
A09p65550 Brassica napus HOM05D000480 ORTHO05D000313 3.0e-11 73.2 215 29.3
Cc09_g09270 Coffea canephora HOM05D000009 ORTHO05D000313 3.0e-11 73.2 253 27.3
CSS0039192 Camellia sinensis var. sinensis HOM05D000480 ORTHO05D000313 3.9e-11 72.8 168 33.3
CANSAT21G1221 Cannabis sativa HOM05D000480 ORTHO05D000313 5.0e-11 72.4 270 27.0
BraA09t38388Z Brassica rapa HOM05D000480 ORTHO05D000313 1.5e-10 70.9 86 46.5
C07p48560 Brassica napus HOM05D000480 ORTHO05D000313 1.9e-10 70.5 196 27.6
Dinv25129 Davidia involucrata HOM05D000480 ORTHO05D000313 1.9e-10 70.5 219 27.9
Lj3g0016586 Lotus japonicus HOM05D000480 ORTHO05D000313 1.9e-10 70.5 163 28.8
C08p49550 Brassica napus HOM05D000480 ORTHO05D000313 3.3e-10 69.7 215 27.9
C08p49600 Brassica napus HOM05D000480 ORTHO05D000313 3.3e-10 69.7 215 27.9
Cfa012319 Carpinus fangiana HOM05D000480 ORTHO05D000313 3.3e-10 69.7 149 35.6
Lj4C504G0 Lonicera japonica HOM05D000480 ORTHO05D000313 3.3e-10 69.7 158 31.0
BcaC06g33526 Brassica carinata HOM05D000480 ORTHO05D000313 4.3e-10 69.3 202 27.2
BcaNung04662 Brassica carinata HOM05D000480 ORTHO05D000313 4.3e-10 69.3 202 27.2
Haze_08374 Corylus avellana HOM05D000480 ORTHO05D000313 4.3e-10 69.3 162 32.1
Dinv25132 Davidia involucrata HOM05D000480 ORTHO05D000313 5.6e-10 68.9 196 30.1
PGR142G3359 Punica granatum HOM05D000480 ORTHO05D000313 5.6e-10 68.9 204 26.0
PGR031G1030 Punica granatum HOM05D000480 ORTHO05D000313 9.5e-10 68.2 180 29.4
Cfa012460 Carpinus fangiana HOM05D000480 ORTHO05D000313 1.6e-09 67.4 160 30.6
Dinv25162 Davidia involucrata HOM05D000480 ORTHO05D000313 1.6e-09 67.4 271 26.6
BcaNung00129 Brassica carinata HOM05D000480 ORTHO05D000313 2.1e-09 67.0 193 27.5
Lj4A495G13 Lonicera japonica HOM05D000480 ORTHO05D000313 2.1e-09 67.0 192 28.1
BcaNung04660 Brassica carinata HOM05D000480 ORTHO05D000313 2.8e-09 66.6 196 27.6
RcHm_v2.0_Chr7g0205421 Rosa chinensis HOM05D000480 ORTHO05D000313 2.8e-09 66.6 212 26.4
THA.LOC104799245 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 2.8e-09 66.6 242 27.3
CARHR223630 Cardamine hirsuta HOM05D000480 ORTHO05D000313 3.6e-09 66.2 223 28.3
Gorai.011G252700 Gossypium raimondii HOM05D000480 ORTHO05D000313 3.6e-09 66.2 205 27.8
Medtr7g021090 Medicago truncatula HOM05D000480 ORTHO05D000313 3.6e-09 66.2 234 25.2
BcaNung04661 Brassica carinata HOM05D000480 ORTHO05D000313 8.0e-09 65.1 196 27.0
Cfa012461 Carpinus fangiana HOM05D000480 ORTHO05D000313 8.0e-09 65.1 158 28.5
Cc01_g07200 Coffea canephora HOM05D000480 ORTHO05D000313 8.0e-09 65.1 205 28.3
Dinv01569 Davidia involucrata HOM05D000480 ORTHO05D000313 8.0e-09 65.1 160 30.0
Nitab4.5_0003567g0080 Nicotiana tabacum HOM05D000480 ORTHO05D000313 8.0e-09 65.1 203 28.6
Gohir.A10G213300 Gossypium hirsutum HOM05D000480 ORTHO05D000313 1.0e-08 64.7 205 28.3
BcaB01g01575 Brassica carinata HOM05D000480 ORTHO05D000313 1.4e-08 64.3 86 41.9
Hma1.2p1_1439F.1_g283460 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 1.4e-08 64.3 152 30.3
Lj2A228T51 Lonicera japonica HOM05D000480 ORTHO05D000313 1.4e-08 64.3 196 27.0
Rhsim08G0165400 Rhododendron simsii HOM05D000480 ORTHO05D000313 1.4e-08 64.3 184 31.5
Dinv25124 Davidia involucrata HOM05D000480 ORTHO05D000313 1.8e-08 63.9 181 29.8
BcaB01g01576 Brassica carinata HOM05D000480 ORTHO05D000313 2.3e-08 63.5 157 31.2
Hma1.2p1_1008F.1_g247250 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 2.3e-08 63.5 181 29.3
Lj2C229T10 Lonicera japonica HOM05D000480 ORTHO05D000313 2.3e-08 63.5 190 27.4
PGR031G3410 Punica granatum HOM05D000480 ORTHO05D000313 2.3e-08 63.5 203 23.2
Actinidia14393 Actinidia chinensis HOM05D000480 ORTHO05D000313 3.1e-08 63.2 214 29.9
Haze_24348 Corylus avellana HOM05D000480 ORTHO05D000313 3.1e-08 63.2 126 32.5
Lj4P505T13 Lonicera japonica HOM05D000480 ORTHO05D000313 3.1e-08 63.2 158 29.1
CiPaw.11G073600 Carya illinoinensis HOM05D000480 ORTHO05D000313 4.0e-08 62.8 161 27.3
Solyc06g074280.2 Solanum lycopersicum HOM05D000480 ORTHO05D000313 4.0e-08 62.8 172 26.2
BcaC03g14171 Brassica carinata HOM05D000480 ORTHO05D000313 5.2e-08 62.4 86 40.7
C02p14440 Brassica napus HOM05D000480 ORTHO05D000313 5.2e-08 62.4 86 40.7
BolC2t07568H Brassica oleracea HOM05D000480 ORTHO05D000313 5.2e-08 62.4 86 40.7
Cfa012317 Carpinus fangiana HOM05D000480 ORTHO05D000313 5.2e-08 62.4 190 30.5
Eucgr.L00113 Eucalyptus grandis HOM05D000480 ORTHO05D000313 5.2e-08 62.4 40 72.5
Migut.H00730 Erythranthe guttata HOM05D000480 ORTHO05D000313 6.8e-08 62.0 120 35.8
Rhsim10G0025700 Rhododendron simsii HOM05D000480 ORTHO05D000313 6.8e-08 62.0 189 27.5
Ciclev10024088m.g Citrus clementina HOM05D000480 ORTHO05D000313 8.9e-08 61.6 174 28.7
Eucgr.L00103 Eucalyptus grandis HOM05D000480 ORTHO05D000313 8.9e-08 61.6 191 29.3
Rhsim12G0115600 Rhododendron simsii HOM05D000480 ORTHO05D000313 8.9e-08 61.6 152 29.6
Sed0012316 Sechium edule HOM05D000480 ORTHO05D000313 8.9e-08 61.6 229 25.3
Thecc.10G054100 Theobroma cacao HOM05D000480 ORTHO05D000313 8.9e-08 61.6 219 27.4
QL01p007528 Quercus lobata HOM05D000480 ORTHO05D000313 1.2e-07 61.2 217 28.6
Haze_08208 Corylus avellana HOM05D000480 ORTHO05D000313 1.5e-07 60.8 256 23.0
Peaxi162Scf00033g01514 Petunia axillaris HOM05D000480 ORTHO05D000313 1.5e-07 60.8 160 30.0
Ca_26582_v3 Cicer arietinum L. HOM05D000480 ORTHO05D000313 2.0e-07 60.5 162 29.6
Eucgr.L00134 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.0e-07 60.5 284 23.6
Eucgr.L01133 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.0e-07 60.5 176 30.1
Cfa012310 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.6e-07 60.1 155 29.0
Cfa012320 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.6e-07 60.1 149 31.5
Medtr3g016210 Medicago truncatula HOM05D000480 ORTHO05D000313 2.6e-07 60.1 203 25.1
Carub.0006s2975 Capsella rubella HOM05D000480 ORTHO05D000313 3.4e-07 59.7 123 35.8
Cc01_g07230 Coffea canephora HOM05D000480 ORTHO05D000313 3.4e-07 59.7 184 27.7
Haze_08408 Corylus avellana HOM05D000480 ORTHO05D000313 3.4e-07 59.7 158 29.1
Dinv25123 Davidia involucrata HOM05D000480 ORTHO05D000313 3.4e-07 59.7 198 26.8
Cfa012289 Carpinus fangiana HOM05D000480 ORTHO05D000313 4.4e-07 59.3 192 25.5
Ciclev10024144m.g Citrus clementina HOM05D000480 ORTHO05D000313 4.4e-07 59.3 230 30.0
Haze_08207 Corylus avellana HOM05D000480 ORTHO05D000313 4.4e-07 59.3 129 31.0
Dinv25127 Davidia involucrata HOM05D000480 ORTHO05D000313 4.4e-07 59.3 209 25.4
Glyma.06G237900 Glycine max HOM05D000480 ORTHO05D000313 4.4e-07 59.3 161 28.0
Rhsim10G0025900 Rhododendron simsii HOM05D000480 ORTHO05D000313 4.4e-07 59.3 198 28.3
THA.LOC104827414 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 4.4e-07 59.3 195 32.8
TAR044G0002 Trochodendron aralioides HOM05D000480 ORTHO05D000313 4.4e-07 59.3 184 26.1
TAR374G0158 Trochodendron aralioides HOM05D000480 ORTHO05D000313 4.4e-07 59.3 178 27.5
BcaC06g33522 Brassica carinata HOM05D000480 ORTHO05D000313 5.8e-07 58.9 116 33.6
Haze_08396 Corylus avellana HOM05D000480 ORTHO05D000313 5.8e-07 58.9 124 32.3
BolC2t10237H Brassica oleracea HOM05D000480 ORTHO05D000313 7.5e-07 58.5 118 38.1
Haze_08199 Corylus avellana HOM05D000480 ORTHO05D000313 7.5e-07 58.5 158 25.9
Duzib205G1201 Durio zibethinus HOM05D000480 ORTHO05D000313 7.5e-07 58.5 225 25.8
Glyma.12G162927 Glycine max HOM05D000480 ORTHO05D000313 7.5e-07 58.5 243 24.7
Lj2A229T43 Lonicera japonica HOM05D000480 ORTHO05D000313 7.5e-07 58.5 199 27.6
Peaxi162Scf00091g00066 Petunia axillaris HOM05D000480 ORTHO05D000313 7.5e-07 58.5 194 24.7
Cfa012608 Carpinus fangiana HOM05D000480 ORTHO05D000313 9.8e-07 58.2 158 31.0
Haze_08379 Corylus avellana HOM05D000480 ORTHO05D000313 9.8e-07 58.2 192 26.6
Eucgr.D00949 Eucalyptus grandis HOM05D000480 ORTHO05D000313 9.8e-07 58.2 178 29.8
Gohir.A05G300400 Gossypium hirsutum HOM05D000480 ORTHO05D000313 9.8e-07 58.2 234 25.2
Gohir.D10G222300 Gossypium hirsutum HOM05D000480 ORTHO05D000313 9.8e-07 58.2 205 25.9
Lj1g0008219 Lotus japonicus HOM05D000480 ORTHO05D000313 9.8e-07 58.2 230 24.8
Nitab4.5_0003567g0060 Nicotiana tabacum HOM05D000480 ORTHO05D000313 9.8e-07 58.2 90 41.1
Thecc.10G052600 Theobroma cacao HOM05D000480 ORTHO05D000313 9.8e-07 58.2 227 26.4
TPR.G29442 Trifolium pratense HOM05D000480 ORTHO05D000313 9.8e-07 58.2 157 29.9
TWI81G0280 Tripterygium wilfordii HOM05D000480 ORTHO05D000313 9.8e-07 58.2 197 27.4
QL01p009178 Quercus lobata HOM05D000480 ORTHO05D000313 1.3e-06 57.8 161 29.2
CANSAT21G1361 Cannabis sativa HOM05D000480 ORTHO05D000313 1.7e-06 57.4 223 25.6
DCAR_030898 Daucus carota HOM05D000480 ORTHO05D000313 1.7e-06 57.4 164 27.4
Eucgr.D00030 Eucalyptus grandis HOM05D000480 ORTHO05D000313 1.7e-06 57.4 177 29.9
Gorai.004G192600 Gossypium raimondii HOM05D000480 ORTHO05D000313 1.7e-06 57.4 165 30.9
QL01p008880 Quercus lobata HOM05D000480 ORTHO05D000313 1.7e-06 57.4 161 29.2
CAN.G919.32 Capsicum annuum HOM05D000480 ORTHO05D000313 2.2e-06 57.0 169 23.7
Migut.B01505 Erythranthe guttata HOM05D000480 ORTHO05D000313 2.2e-06 57.0 80 45.0
Gohir.D10G221900 Gossypium hirsutum HOM05D000480 ORTHO05D000313 2.2e-06 57.0 158 27.8
Hma1.2p1_1439F.1_g283480 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 2.2e-06 57.0 160 24.4
Oeu055407.1 Olea europaea HOM05D000480 ORTHO05D000313 2.2e-06 57.0 156 30.8
Haze_22256 Corylus avellana HOM05D000480 ORTHO05D000313 2.9e-06 56.6 151 28.5
Rhsim10G0025200 Rhododendron simsii HOM05D000480 ORTHO05D000313 2.9e-06 56.6 161 29.8
TPR.G10204 Trifolium pratense HOM05D000480 ORTHO05D000313 2.9e-06 56.6 231 25.5
Cfa012609 Carpinus fangiana HOM05D000480 ORTHO05D000313 3.7e-06 56.2 158 25.9
Eucgr.L00144 Eucalyptus grandis HOM05D000480 ORTHO05D000313 3.7e-06 56.2 164 29.9
Gohir.A05G300266 Gossypium hirsutum HOM05D000480 ORTHO05D000313 3.7e-06 56.2 219 24.2
TAR023G0002 Trochodendron aralioides HOM05D000480 ORTHO05D000313 3.7e-06 56.2 184 26.6
TAR374G0103 Trochodendron aralioides HOM05D000480 ORTHO05D000313 3.7e-06 56.2 175 29.1
arahy.Tifrunner.gnm1.ann1.W8NE4R Arachis hypogaea HOM05D000480 ORTHO05D000313 4.9e-06 55.8 155 25.8
Duzib114G0567 Durio zibethinus HOM05D000480 ORTHO05D000313 4.9e-06 55.8 237 21.9
THA.LOC104820697 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 4.9e-06 55.8 93 33.3
Aa31LG2G13160 Aethionema arabicum HOM05D000480 ORTHO05D000313 6.4e-06 55.5 180 26.1
Cfa004479 Carpinus fangiana HOM05D000480 ORTHO05D000313 6.4e-06 55.5 158 27.2
Cfa012322 Carpinus fangiana HOM05D000480 ORTHO05D000313 8.3e-06 55.1 170 25.9
Haze_08389 Corylus avellana HOM05D000480 ORTHO05D000313 8.3e-06 55.1 159 26.4
Haze_08419 Corylus avellana HOM05D000480 ORTHO05D000313 8.3e-06 55.1 169 28.4
PGR031G3290 Punica granatum HOM05D000480 ORTHO05D000313 8.3e-06 55.1 94 36.2
PGR031G3521 Punica granatum HOM05D000480 ORTHO05D000313 8.3e-06 55.1 83 39.8
TPR.G22961 Trifolium pratense HOM05D000480 ORTHO05D000313 8.3e-06 55.1 153 29.4


User provided reference genes

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