Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G241300 Theobroma cacao HOM05D032541 ORTHO05D029070 1.7e-135 486.1 262 100.0
Thecc.03G241500 Theobroma cacao HOM05D000480 ORTHO05D000313 4.4e-27 125.9 247 35.2
Thecc.07G096600 Theobroma cacao HOM05D000480 ORTHO05D000313 2.7e-16 90.1 275 33.8
Thecc.07G096500 Theobroma cacao HOM05D000480 ORTHO05D000313 3.5e-16 89.7 265 34.3
Thecc.03G241200 Theobroma cacao HOM05D000480 ORTHO05D029070 4.3e-14 82.8 144 40.3
Thecc.07G096900 Theobroma cacao HOM05D000480 ORTHO05D000313 4.9e-10 69.3 108 48.1
COL.COLO4_36719 Corchorus olitorius HOM05D032541 ORTHO05D029070 1.9e-09 67.4 129 33.3
Cfa021235 Carpinus fangiana HOM05D000480 ORTHO05D000313 7.1e-09 65.5 155 30.3
COL.COLO4_36718 Corchorus olitorius HOM05D032541 ORTHO05D029070 9.3e-09 65.1 256 27.3
Cfa012320 Carpinus fangiana HOM05D000480 ORTHO05D000313 1.2e-08 64.7 171 30.4
Duzib114G0019 Durio zibethinus HOM05D000480 ORTHO05D000313 2.7e-08 63.5 192 32.3
Cfa021225 Carpinus fangiana HOM05D000480 ORTHO05D000313 7.8e-08 62.0 120 35.8
Thecc.10G054900 Theobroma cacao HOM05D000480 ORTHO05D000313 7.8e-08 62.0 217 30.4
Cfa012319 Carpinus fangiana HOM05D000480 ORTHO05D000313 1.7e-07 60.8 186 26.9
Dinv25130 Davidia involucrata HOM05D000480 ORTHO05D000313 2.3e-07 60.5 254 28.7
Glyma.12G162927 Glycine max HOM05D000480 ORTHO05D000313 3.0e-07 60.1 251 24.7
Psat4g134080 Pisum sativum HOM05D000480 ORTHO05D000313 3.9e-07 59.7 177 29.9
TPR.G13724 Trifolium pratense HOM05D000480 ORTHO05D000313 8.7e-07 58.5 223 27.8
Glyma.06G237900 Glycine max HOM05D000480 ORTHO05D000313 1.1e-06 58.2 211 28.0
Cfa012310 Carpinus fangiana HOM05D000480 ORTHO05D000313 1.5e-06 57.8 240 27.9
QL01p009420 Quercus lobata HOM05D000480 ORTHO05D000313 1.5e-06 57.8 226 29.2
Thecc.10G054300 Theobroma cacao HOM05D000480 ORTHO05D000313 1.9e-06 57.4 118 34.7
arahy.Tifrunner.gnm1.ann1.JBU02Z Arachis hypogaea HOM05D000480 ORTHO05D000313 5.6e-06 55.8 254 30.3
Medtr8g073260 Medicago truncatula HOM05D000480 ORTHO05D000313 7.3e-06 55.5 132 32.6
Psat4g105000 Pisum sativum HOM05D000480 ORTHO05D000313 7.3e-06 55.5 223 28.7
TPR.G33840 Trifolium pratense HOM05D000480 ORTHO05D000313 7.3e-06 55.5 236 28.0
Cfa012460 Carpinus fangiana HOM05D000480 ORTHO05D000313 9.6e-06 55.1 131 32.8
Lj1g0008219 Lotus japonicus HOM05D000480 ORTHO05D000313 9.6e-06 55.1 188 29.3
Thecc.10G055800 Theobroma cacao HOM05D000480 ORTHO05D000313 9.6e-06 55.1 251 25.9


User provided reference genes

Program Settings