Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 9.7e-81 303.5 164 100.0
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 6.3e-72 274.2 164 86.6
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 3.7e-64 248.4 199 68.3
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 1.8e-63 246.1 164 75.6
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 3.1e-63 245.4 164 75.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 4.1e-63 245.0 164 75.0
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.5e-60 235.7 165 78.8
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 7.0e-55 217.6 167 65.3
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.0e-54 216.1 164 67.7
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.7e-54 215.7 167 70.7
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 5.5e-52 208.0 164 63.4
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 9.5e-52 207.2 164 64.6
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 2.1e-51 206.1 164 68.3
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 3.6e-51 205.3 164 64.0
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 8.0e-51 204.1 164 64.0
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.0e-50 203.8 173 68.2
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.5e-49 199.9 164 62.8
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 3.4e-49 198.7 165 66.7
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 5.7e-49 198.0 164 61.0
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 5.7e-49 198.0 164 61.0
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.3e-48 196.8 162 64.2
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.7e-48 196.4 164 61.6
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 8.3e-48 194.1 164 66.5
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 7.0e-47 191.0 164 62.8
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.0e-46 189.5 164 57.9
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 2.7e-46 189.1 164 57.9
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 4.5e-46 188.3 164 57.3
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 4.5e-46 188.3 164 58.5
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 7.8e-46 187.6 164 57.3
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.0e-45 187.2 164 62.8
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.3e-45 186.8 158 59.5
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.6e-45 184.5 164 63.4
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.6e-45 184.1 164 57.9
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.3e-44 181.8 164 60.4
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 7.3e-44 181.0 164 56.1
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 9.5e-44 180.6 165 60.6
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.2e-43 180.3 164 56.7
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 1.6e-43 179.9 175 58.3
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.6e-43 179.9 164 60.4
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.8e-43 179.1 164 58.5
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 3.6e-43 178.7 164 62.2
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 6.1e-43 177.9 166 57.2
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.0e-42 177.2 164 56.7
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.4e-42 176.8 164 55.5
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 2.3e-42 176.0 164 56.7
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 3.0e-42 175.6 165 53.3
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 5.2e-42 174.9 164 61.0
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 5.2e-42 174.9 164 61.0
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 6.8e-42 174.5 166 53.6
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 1.5e-41 173.3 164 60.4
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.5e-41 173.3 164 55.5
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.0e-41 172.9 165 53.3
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 2.0e-41 172.9 166 60.2
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 3.4e-41 172.2 164 54.3
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 3.4e-41 172.2 164 53.7
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 5.8e-41 171.4 158 53.8
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.7e-40 169.9 165 52.1
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 3.7e-40 168.7 164 54.9
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 3.7e-40 168.7 160 51.9
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 4.9e-40 168.3 164 56.1
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 6.4e-40 167.9 269 38.7
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.3e-40 167.5 164 53.0
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 3.2e-39 165.6 168 54.8
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 3.2e-39 165.6 166 53.6
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 4.1e-39 165.2 168 55.4
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 4.1e-39 165.2 246 43.9
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 7.0e-39 164.5 170 59.4
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 7.0e-39 164.5 164 59.1
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 9.2e-39 164.1 225 47.6
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 9.2e-39 164.1 164 56.1
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.6e-38 163.3 160 50.0
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.7e-38 162.5 163 50.9
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 7.8e-38 161.0 164 52.4
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.0e-37 160.6 165 51.5
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.3e-37 160.2 160 51.2
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.7e-37 159.8 162 49.4
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 2.3e-37 159.5 168 51.8
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 3.0e-37 159.1 160 50.0
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 3.0e-37 159.1 167 51.5
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 5.0e-37 158.3 162 49.4
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.1e-36 157.1 192 53.6
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.5e-36 156.8 162 48.8
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 3.3e-36 155.6 167 48.5
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 3.3e-36 155.6 162 48.1
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 3.3e-36 155.6 119 63.9
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.3e-36 155.2 160 50.0
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 4.3e-36 155.2 164 47.6
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 4.3e-36 155.2 164 47.6
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 7.3e-36 154.5 162 48.1
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 9.5e-36 154.1 150 62.7
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 9.5e-36 154.1 165 49.7
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.6e-35 153.3 164 48.8
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.6e-35 153.3 161 50.3
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 2.1e-35 152.9 164 48.8
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 2.1e-35 152.9 193 46.1
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 3.6e-35 152.1 166 60.2
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 5.2e-34 148.3 167 57.5
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 6.8e-34 147.9 165 48.5
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.2e-33 147.1 164 59.1
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.5e-33 146.7 164 50.0
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 2.0e-33 146.4 226 46.5
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 4.4e-33 145.2 165 45.5
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 1.7e-32 143.3 164 48.2
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 4.9e-32 141.7 156 51.3
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.1e-31 140.6 202 41.6
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 4.1e-31 138.7 167 47.3
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.2e-30 137.1 182 41.2
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 2.7e-30 136.0 174 52.3
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 7.8e-30 134.4 172 49.4
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 1.0e-29 134.0 166 46.4
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.7e-29 133.3 159 47.2
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.3e-29 132.9 160 44.4
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.3e-29 132.9 169 56.8
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 3.0e-29 132.5 166 44.6
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.1e-28 130.6 158 46.2
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.9e-28 129.8 151 45.7
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.9e-28 129.8 83 74.7
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.3e-28 128.6 155 48.4
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 9.5e-28 127.5 160 48.1
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.2e-27 127.1 158 44.9
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.2e-27 127.1 159 45.9
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.2e-27 127.1 157 44.6
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.6e-27 126.7 158 44.9
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.8e-27 125.9 157 44.6
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 3.6e-27 125.6 107 59.8
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 6.2e-27 124.8 160 43.8
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.4e-26 123.6 115 54.8
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.8e-26 123.2 154 44.8
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 2.3e-26 122.9 151 45.0
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.1e-26 122.5 151 44.4
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 3.1e-26 122.5 161 46.6
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 4.0e-26 122.1 154 44.2
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 4.0e-26 122.1 154 44.2
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 5.2e-26 121.7 157 43.3
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 5.2e-26 121.7 157 43.3
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 9.9e-25 117.5 115 53.9
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 6.4e-24 114.8 111 54.1
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.4e-23 113.6 170 39.4
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.9e-23 113.2 161 48.4
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.2e-23 112.5 81 65.4
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 7.8e-22 107.8 82 61.0
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 3.3e-20 102.4 162 38.9
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 2.1e-19 99.8 161 37.3
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 8.1e-19 97.8 88 55.7
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.1e-18 97.4 75 64.0
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 1.1e-18 97.4 161 39.1
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 3.1e-18 95.9 81 56.8
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 6.8e-18 94.7 83 56.6
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.4e-15 85.1 77 54.5
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 4.6e-14 82.0 87 66.7
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 3.9e-13 79.0 103 45.6
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.5e-12 77.0 109 40.4
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 2.5e-12 76.3 83 41.0
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 3.3e-12 75.9 88 62.5
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.6e-11 73.6 80 48.8
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 6.2e-11 71.6 108 43.5
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.1e-10 70.9 94 39.4
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 3.4e-09 65.9 46 67.4
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 6.0e-06 55.1 44 54.5


User provided reference genes

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