Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 2.6e-203 711.8 366 100.0
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 1.6e-187 659.4 366 92.3
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 4.4e-182 641.3 368 89.9
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 4.1e-180 634.8 385 86.5
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.6e-179 632.9 368 88.9
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.8e-172 609.4 326 94.5
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 5.4e-156 554.7 377 78.0
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 7.8e-155 550.8 378 77.2
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 3.0e-154 548.9 345 82.3
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 8.1e-152 540.8 383 75.5
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.2e-150 537.0 369 76.2
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.5e-150 536.6 369 76.4
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 4.4e-150 535.0 378 74.9
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 4.4e-150 535.0 379 75.5
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 5.8e-150 534.6 374 76.7
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 1.3e-149 533.5 375 74.7
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 1.3e-149 533.5 375 74.7
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.3e-149 533.5 331 82.8
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.3e-149 533.5 351 80.3
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 2.9e-149 532.3 386 73.6
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 3.7e-149 531.9 371 77.9
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 4.9e-149 531.6 374 75.4
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 6.4e-149 531.2 372 76.1
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 8.3e-149 530.8 374 74.1
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 8.3e-149 530.8 387 74.4
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.1e-148 530.4 361 77.6
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 1.1e-148 530.4 372 75.5
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 5.4e-148 528.1 372 76.9
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 5.4e-148 528.1 298 87.9
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 5.4e-148 528.1 372 74.7
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 7.1e-148 527.7 344 78.5
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 7.1e-148 527.7 326 81.6
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 2.1e-147 526.2 374 74.3
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 3.5e-147 525.4 378 74.9
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 4.6e-147 525.0 374 74.1
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 1.3e-146 523.5 410 70.5
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 3.9e-146 521.9 393 72.5
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 3.9e-146 521.9 365 75.9
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 6.6e-146 521.2 376 73.9
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 8.6e-146 520.8 374 74.1
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.5e-145 520.0 364 75.0
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.5e-145 520.0 374 74.6
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 1.9e-145 519.6 377 73.5
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 3.3e-145 518.8 349 77.9
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 4.3e-145 518.5 366 75.1
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 4.3e-145 518.5 381 73.2
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 3.6e-144 515.4 303 85.5
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 4.7e-144 515.0 377 73.7
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 6.2e-144 514.6 351 76.9
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 8.1e-144 514.2 350 78.9
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.1e-143 513.8 303 85.1
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 1.1e-143 513.8 325 80.6
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 3.1e-143 512.3 327 81.3
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 6.8e-143 511.1 371 73.6
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 8.9e-143 510.8 371 73.3
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.0e-142 509.6 370 72.2
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 2.6e-142 509.2 379 70.2
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 2.6e-142 509.2 357 75.4
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 4.4e-142 508.4 371 73.3
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 1.3e-141 506.9 344 76.2
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 1.3e-141 506.9 383 70.8
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 2.9e-141 505.8 374 70.6
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 2.9e-141 505.8 378 69.8
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 3.7e-141 505.4 328 77.4
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 3.7e-141 505.4 373 71.6
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 4.9e-141 505.0 329 79.9
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 6.4e-141 504.6 377 71.4
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 1.1e-140 503.8 376 72.1
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 1.9e-140 503.1 375 70.1
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 1.9e-140 503.1 375 70.1
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.9e-140 503.1 328 78.0
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 2.4e-140 502.7 374 69.8
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 2.4e-140 502.7 382 68.6
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 2.4e-140 502.7 380 70.5
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 3.2e-140 502.3 374 69.5
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 5.4e-140 501.5 326 79.8
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.2e-139 500.4 373 70.5
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 1.2e-139 500.4 375 70.7
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 1.6e-139 500.0 373 72.9
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-139 499.2 375 70.4
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 4.6e-139 498.4 380 72.1
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 4.6e-139 498.4 378 69.3
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 7.8e-139 497.7 338 76.9
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.0e-138 497.3 373 70.2
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 2.3e-138 496.1 373 70.8
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 3.0e-138 495.7 382 69.4
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 3.9e-138 495.4 336 76.2
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 2.5e-137 492.7 331 76.4
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.2e-136 490.3 290 89.7
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 6.2e-136 488.0 434 64.1
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 9.9e-134 480.7 377 70.0
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.4e-133 478.0 370 69.2
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 6.4e-133 478.0 339 73.5
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 6.4e-133 478.0 281 83.3
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 8.4e-133 477.6 307 78.2
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 1.1e-132 477.2 364 71.7
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.4e-132 476.1 304 78.3
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 7.1e-132 474.6 347 72.6
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 9.3e-132 474.2 332 74.1
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.2e-131 473.8 334 73.4
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.0e-130 469.2 312 77.6
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 8.7e-130 467.6 282 80.5
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 2.5e-129 466.1 395 63.5
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.1e-128 463.0 286 79.0
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 2.1e-128 463.0 301 75.7
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 3.6e-128 462.2 327 74.0
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 1.8e-127 459.9 299 75.9
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 3.1e-127 459.1 286 77.6
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 6.9e-127 458.0 286 77.6
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 9.0e-127 457.6 303 74.9
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.4e-126 455.7 421 60.8
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 4.4e-126 455.3 286 76.9
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 7.6e-126 454.5 278 80.6
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 9.9e-126 454.1 286 76.6
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.3e-125 453.8 327 74.6
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 2.2e-125 453.0 283 78.1
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 2.2e-125 453.0 283 78.1
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 2.4e-124 449.5 277 79.1
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 2.4e-124 449.5 277 79.1
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 2.4e-124 449.5 277 79.1
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 2.4e-124 449.5 277 79.1
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 3.2e-124 449.1 273 79.9
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 1.5e-121 440.3 336 72.6
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 9.9e-118 427.6 315 74.3
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 4.3e-113 412.1 267 77.5
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 6.9e-111 404.8 317 65.3
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 8.4e-109 397.9 263 78.3
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.1e-103 380.9 216 88.0
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 2.7e-99 366.3 330 63.9
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 8.5e-93 344.7 276 69.6
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 5.5e-92 342.0 276 69.6
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.6e-91 340.5 190 89.5
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 6.3e-88 328.6 283 56.9
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 2.6e-86 323.2 270 59.3
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 7.7e-86 321.6 273 59.0
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 1.7e-85 320.5 265 64.2
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 6.5e-77 292.0 253 65.6
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 3.0e-74 283.1 229 68.1
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 1.1e-71 274.6 255 52.5
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.0e-70 270.4 239 63.2
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 4.5e-62 242.7 179 69.8
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 7.7e-62 241.9 179 69.8
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 1.3e-61 241.1 162 78.4
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.9e-60 237.3 179 68.7
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.0e-58 231.5 134 85.1
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 3.1e-42 176.8 114 76.3
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 5.8e-41 172.6 102 81.4
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 7.5e-41 172.2 115 73.9
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 1.2e-38 164.9 157 53.5
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 6.8e-34 149.1 132 62.1
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 9.8e-33 145.2 76 88.2
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 6.4e-32 142.5 76 85.5
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 2.4e-31 140.6 79 84.8
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.0e-29 135.2 102 68.6
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-26 125.2 62 87.1
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 3.1e-26 123.6 114 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 7.6e-25 119.0 102 53.9
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 9.2e-23 112.1 88 63.6
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 3.5e-22 110.2 73 72.6
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 5.1e-21 106.3 53 96.2
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 1.1e-18 98.6 141 41.8
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 6.9e-18 95.9 105 52.4
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.5e-17 94.7 55 83.6
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 2.9e-16 90.5 57 82.5
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 1.2e-14 85.1 53 73.6
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 1.0e-13 82.0 55 76.4
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.7e-08 64.7 40 72.5
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9


User provided reference genes

Program Settings