Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.8e-197 691.8 359 100.0
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.3e-149 533.5 386 74.4
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 8.2e-149 530.8 370 77.8
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 8.5e-130 467.6 386 64.0
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.5e-129 466.1 386 64.2
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.5e-121 440.3 389 63.5
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 6.7e-119 431.4 387 59.9
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.6e-118 429.5 392 61.2
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 6.3e-117 424.9 390 61.8
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.4e-116 423.7 399 60.7
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.7e-115 419.5 386 60.9
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 5.9e-115 418.3 376 62.5
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.2e-114 416.4 380 58.9
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.2e-114 416.4 387 60.2
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 4.2e-113 412.1 378 60.6
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.2e-112 410.6 387 60.7
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 2.1e-112 409.8 386 58.0
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 8.0e-112 407.9 389 58.6
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.0e-111 407.5 391 57.5
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.4e-111 407.1 387 57.1
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.5e-110 403.7 381 60.1
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 5.7e-110 401.7 385 58.7
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 7.5e-110 401.4 371 62.5
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.5e-110 401.4 387 55.6
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 7.5e-110 401.4 386 60.1
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 9.8e-110 401.0 387 57.4
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.2e-109 399.8 390 57.9
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.8e-109 398.7 371 62.0
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 8.3e-109 397.9 387 57.4
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.1e-108 397.5 381 59.8
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.8e-108 396.7 387 55.0
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 3.1e-108 396.0 390 57.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 3.1e-108 396.0 387 57.6
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 7.0e-108 394.8 387 55.0
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.6e-107 393.7 387 56.6
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.0e-107 393.3 387 56.3
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.5e-107 392.1 387 56.8
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.5e-107 392.1 387 56.8
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 5.9e-107 391.7 387 56.8
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 7.7e-107 391.3 381 57.5
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 7.7e-107 391.3 381 58.8
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.0e-106 391.0 382 58.4
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.9e-106 389.4 388 56.7
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.1e-105 387.5 387 56.6
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.5e-105 387.1 387 57.1
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.5e-105 386.3 387 56.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.5e-105 386.3 391 55.2
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 9.5e-105 384.4 388 58.5
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.1e-104 383.3 377 58.6
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 3.6e-104 382.5 381 56.7
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 4.7e-104 382.1 391 55.0
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.3e-101 374.0 356 61.0
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.7e-101 373.6 388 53.1
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 2.7e-99 366.3 376 57.2
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 2.7e-99 366.3 386 55.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.7e-98 363.6 383 52.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 2.3e-98 363.2 390 52.6
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.9e-98 362.5 393 55.7
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.9e-98 362.5 393 55.7
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 8.6e-98 361.3 329 59.0
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.1e-97 360.9 381 55.9
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.5e-97 359.8 371 55.8
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 2.8e-96 356.3 389 52.2
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 6.1e-96 355.1 389 51.9
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.0e-95 354.4 387 52.2
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.1e-95 352.8 319 60.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.9e-93 346.3 496 46.0
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 5.4e-92 342.0 388 53.6
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 5.4e-92 342.0 389 51.4
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.5e-91 339.3 387 51.4
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.0e-90 337.8 351 55.3
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.3e-89 332.8 384 50.0
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 2.1e-88 330.1 397 50.4
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 6.2e-88 328.6 354 52.3
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.8e-87 327.0 314 56.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.1e-87 326.2 467 42.8
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.7e-85 320.5 388 51.8
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 1.4e-84 317.4 294 59.5
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-83 314.3 372 48.4
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.0e-82 309.7 343 50.4
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.5e-81 307.4 353 50.7
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 5.6e-81 305.4 349 50.7
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 2.3e-79 300.1 209 71.3
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.4e-76 290.0 421 44.9
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 3.2e-76 289.7 389 47.0
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 3.5e-75 286.2 334 52.4
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.9e-73 280.4 291 53.6
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 9.5e-73 278.1 209 66.0
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.1e-72 276.9 325 51.1
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.1e-72 276.9 313 50.2
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 8.1e-72 275.0 382 45.3
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.1e-71 274.6 465 42.6
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 6.8e-71 271.9 412 43.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 6.4e-69 265.4 331 48.0
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 8.4e-69 265.0 395 43.0
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.1e-68 264.6 191 67.5
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.4e-68 263.5 215 60.5
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.7e-67 260.0 257 56.4
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 7.8e-67 258.5 351 46.7
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 9.6e-65 251.5 296 50.7
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.4e-63 246.9 308 50.0
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.0e-63 245.0 178 67.4
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.6e-62 243.4 402 41.5
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 5.8e-62 242.3 338 45.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 5.1e-58 229.2 170 62.9
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.1e-57 228.0 224 54.9
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.3e-57 226.5 365 41.9
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 2.1e-56 223.8 153 71.2
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.1e-56 221.9 316 47.8
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 1.3e-50 204.5 409 36.4
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.3e-50 203.8 336 42.3
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.3e-48 198.0 140 70.7
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.1e-48 197.2 232 49.6
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 3.1e-47 193.4 363 35.3
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.6e-46 190.3 337 40.1
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 7.1e-44 182.2 203 47.3
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.5e-36 157.1 117 66.7
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 5.0e-29 132.9 149 52.3
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.7e-27 127.1 210 44.8
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-24 117.5 72 73.6
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-24 117.5 72 73.6
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 2.8e-24 117.1 147 52.4
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.8e-24 116.3 72 72.2
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.8e-23 114.4 72 73.6
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.3e-23 112.8 75 68.0
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 2.0e-22 110.9 423 27.4
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 6.7e-18 95.9 125 42.4
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 2.0e-17 94.4 120 50.0
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.3e-17 93.6 167 37.7
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.7e-17 92.0 170 39.4
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.2e-14 85.1 168 31.5
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 4.5e-14 83.2 83 54.2
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.2e-12 77.0 43 79.1
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.2e-12 76.6 47 72.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 7.2e-12 75.9 145 38.6
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-11 75.1 155 34.2
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 2.0e-09 67.8 87 50.6
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 7.7e-06 55.8 48 60.4


User provided reference genes

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