Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 9.4e-119 430.6 292 100.0
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 2.2e-88 329.7 204 82.4
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 2.9e-88 329.3 202 81.7
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 6.6e-80 301.6 202 77.7
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.3e-71 272.7 202 70.3
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.6e-71 271.9 202 70.3
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.7e-70 268.9 202 69.3
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.3e-69 266.5 204 71.6
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.7e-67 260.4 204 69.1
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.9e-64 249.2 204 67.2
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.4e-37 161.0 203 48.8
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 4.0e-37 159.5 222 47.3
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.5e-36 157.5 218 46.8
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.8e-35 152.9 212 49.5
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 3.2e-34 149.8 209 50.2
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 4.2e-34 149.4 206 47.6
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 1.6e-33 147.5 206 47.1
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 1.1e-31 141.4 211 44.5
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 2.4e-29 133.7 203 43.3
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.0e-29 132.9 212 42.9
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.5e-28 131.0 213 42.3
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 1.3e-27 127.9 209 43.1
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.4e-26 124.4 209 43.5
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.9e-26 124.0 221 41.6
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 3.2e-26 123.2 220 43.6
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 7.1e-26 122.1 210 42.9
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 9.3e-26 121.7 212 44.8
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.2e-25 121.3 217 41.9
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.6e-25 120.9 219 40.6
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.6e-25 120.9 206 42.7
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.5e-25 119.8 224 39.7
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.0e-24 118.2 227 40.1
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 3.0e-24 116.7 215 40.5
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.5e-23 113.6 224 37.1
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 3.3e-23 113.2 208 38.9
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 9.6e-23 111.7 208 41.8
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 9.6e-23 111.7 212 39.6
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 9.6e-23 111.7 210 40.0
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.3e-22 111.3 198 40.4
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.6e-22 110.9 211 38.9
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.6e-22 110.9 223 40.8
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.1e-22 110.5 225 37.8
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.1e-22 110.5 207 38.6
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 6.2e-22 109.0 208 39.9
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 8.2e-22 108.6 213 41.3
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 8.2e-22 108.6 226 38.5
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.4e-21 107.8 215 40.0
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 1.4e-21 107.8 226 38.1
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 4.0e-21 106.3 212 39.2
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 2.0e-20 104.0 207 41.5
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 4.5e-20 102.8 208 40.4
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.8e-20 102.4 200 38.5
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.3e-19 101.3 209 38.8
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.3e-19 101.3 219 36.5
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.7e-19 100.9 212 40.1
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 2.2e-19 100.5 202 37.1
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 2.9e-19 100.1 211 39.3
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 3.8e-19 99.8 217 37.8
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 3.8e-19 99.8 227 36.1
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 4.9e-19 99.4 200 38.0
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 4.9e-19 99.4 200 37.5
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 6.5e-19 99.0 200 38.0
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.1e-18 98.2 217 38.7
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.5e-18 97.1 201 36.3
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 3.2e-18 96.7 209 38.8
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 7.1e-18 95.5 210 38.6
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.6e-17 94.4 200 37.5
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 1.6e-17 94.4 211 38.4
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 7.9e-17 92.0 202 37.1
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 3.0e-16 90.1 216 34.3
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 3.0e-16 90.1 204 39.2
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 3.0e-16 90.1 210 37.6
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 3.9e-16 89.7 207 36.2
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 5.1e-16 89.4 215 33.5
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 6.7e-16 89.0 210 39.0
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 6.7e-16 89.0 206 34.0
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 8.7e-16 88.6 227 34.8
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 1.9e-15 87.4 202 35.1
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 1.9e-15 87.4 202 35.1
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.9e-15 87.4 78 61.5
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.3e-15 86.3 213 35.2
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 4.3e-15 86.3 202 36.1
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 5.7e-15 85.9 208 37.0
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 7.4e-15 85.5 212 34.0
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 9.7e-15 85.1 135 44.4
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 9.7e-15 85.1 207 37.7
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 1.3e-14 84.7 205 38.0
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 1.3e-14 84.7 219 35.6
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.6e-14 84.3 207 37.7
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 6.3e-14 82.4 224 36.2
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 6.3e-14 82.4 225 36.0
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.1e-13 81.6 217 31.8
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 1.4e-13 81.3 205 35.1
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 3.1e-13 80.1 204 34.8
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 6.9e-13 79.0 202 35.6
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.5e-12 77.8 208 33.2
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 2.0e-12 77.4 159 35.8
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 3.4e-12 76.6 229 35.8
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 1.0e-11 75.1 206 33.5
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.3e-11 74.7 206 35.0
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 1.3e-11 74.7 208 34.1
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 2.2e-11 73.9 204 33.3
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 5.0e-11 72.8 204 32.8
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 2.5e-10 70.5 148 37.8
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 2.1e-09 67.4 137 36.5
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 2.7e-09 67.0 147 39.5
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 3.6e-09 66.6 207 32.4
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 7.9e-09 65.5 60 55.0
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 1.8e-08 64.3 204 31.9
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 1.8e-08 64.3 225 30.7
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 6.7e-08 62.4 206 31.6
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 1.1e-07 61.6 80 42.5
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.9e-07 60.8 55 58.2
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 5.7e-07 59.3 202 30.2
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 9.7e-07 58.5 57 56.1
THA.LOC104811030 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 1.6e-06 57.8 219 31.5
BcaB05g22864 Brassica carinata HOM05D001903 ORTHO05D001847 2.2e-06 57.4 207 30.0
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 3.7e-06 56.6 66 50.0
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 4.8e-06 56.2 55 54.5


User provided reference genes

Program Settings