Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 2.0e-141 505.8 252 100.0
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 2.0e-109 399.4 253 82.2
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 1.2e-101 373.6 254 76.0
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 1.6e-98 363.2 209 85.6
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 1.8e-94 349.7 225 78.2
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 2.5e-91 339.3 254 71.3
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 2.5e-88 329.3 254 69.7
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 6.5e-76 288.1 236 63.6
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 1.4e-75 287.0 234 64.1
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 1.9e-75 286.6 252 59.9
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 3.2e-75 285.8 239 61.5
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 9.4e-75 284.3 239 61.1
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 6.1e-74 281.6 249 61.0
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 1.4e-73 280.4 240 62.1
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 1.4e-73 280.4 256 58.2
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 3.0e-73 279.3 236 63.6
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 5.1e-73 278.5 253 59.3
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 2.0e-72 276.6 242 61.2
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 3.3e-72 275.8 238 62.2
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 3.3e-72 275.8 250 58.8
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 6.3e-71 271.6 240 60.4
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 8.2e-71 271.2 254 59.1
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 1.1e-70 270.8 244 60.7
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 1.3e-68 263.8 249 56.2
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 1.4e-67 260.4 247 56.7
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 4.2e-67 258.8 247 56.3
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 7.2e-67 258.1 249 57.8
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 7.2e-67 258.1 252 55.2
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.2e-66 257.3 250 58.8
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 2.1e-66 256.5 257 56.4
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 3.0e-65 252.7 237 59.1
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 5.1e-65 251.9 251 57.8
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 8.8e-65 251.1 252 56.7
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 1.5e-64 250.4 250 58.0
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 5.7e-64 248.4 212 61.8
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 7.4e-64 248.1 252 58.7
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 1.7e-63 246.9 222 60.8
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 3.7e-63 245.7 242 55.8
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 1.1e-62 244.2 241 56.8
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 1.2e-61 240.7 203 62.6
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 2.6e-61 239.6 225 56.9
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 3.5e-61 239.2 252 51.2
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 3.5e-61 239.2 243 53.5
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 5.9e-61 238.4 248 55.2
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 1.0e-60 237.7 230 53.0
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 8.5e-60 234.6 242 54.1
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 1.4e-59 233.8 242 52.5
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 7.2e-59 231.5 288 50.3
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 1.2e-58 230.7 207 60.9
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 1.2e-58 230.7 240 54.2
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 6.1e-58 228.4 227 55.1
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 6.1e-58 228.4 238 52.1
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 2.3e-57 226.5 180 63.9
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 3.9e-57 225.7 208 57.2
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 1.5e-56 223.8 242 52.9
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 2.6e-56 223.0 203 58.6
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 2.6e-56 223.0 236 54.7
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 3.3e-56 222.6 241 53.1
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 1.7e-55 220.3 241 49.8
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 2.2e-55 219.9 201 60.2
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 4.8e-55 218.8 247 50.6
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 8.2e-55 218.0 254 48.8
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 1.1e-54 217.6 208 54.8
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.1e-54 217.6 248 53.6
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 2.4e-54 216.5 257 47.9
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.4e-54 216.5 287 45.3
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 1.3e-52 210.7 252 48.0
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 2.9e-52 209.5 190 59.5
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 1.1e-51 207.6 211 51.2
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 4.2e-51 205.7 233 51.5
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 4.2e-51 205.7 195 59.0
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 1.6e-50 203.8 238 50.0
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 1.0e-49 201.1 194 57.2
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 1.8e-49 200.3 181 59.1
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 1.8e-49 200.3 243 48.6
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 4.0e-49 199.1 172 59.9
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 6.8e-49 198.4 243 45.7
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 1.2e-48 197.6 186 55.9
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 2.0e-48 196.8 219 51.6
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 5.7e-48 195.3 207 55.1
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 5.7e-48 195.3 234 47.9
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 7.5e-48 194.9 172 59.9
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 9.7e-48 194.5 202 53.5
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 2.2e-47 193.4 164 62.2
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 2.2e-47 193.4 231 48.1
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 2.2e-47 193.4 182 56.6
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 3.7e-47 192.6 163 60.7
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 3.7e-47 192.6 163 60.7
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 3.7e-47 192.6 180 56.1
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 3.7e-47 192.6 180 56.1
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 4.8e-47 192.2 239 47.3
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 4.8e-47 192.2 229 48.0
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 6.3e-47 191.8 243 48.1
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 8.3e-47 191.4 227 49.8
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 1.4e-46 190.7 171 59.1
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 1.4e-46 190.7 264 47.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.8e-46 190.3 177 57.1
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 2.4e-46 189.9 162 59.3
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.4e-46 189.9 177 57.1
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 3.1e-46 189.5 206 48.1
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 5.9e-45 185.3 175 56.6
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 2.2e-44 183.3 219 45.7
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 1.5e-43 180.6 203 48.8
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 7.2e-43 178.3 215 45.6
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 4.0e-41 172.6 207 48.8
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 1.3e-39 167.5 233 43.3
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 5.0e-36 155.6 232 42.7
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 6.6e-36 155.2 216 44.9
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 1.6e-34 150.6 122 59.0
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 2.8e-34 149.8 167 51.5
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 6.1e-34 148.7 227 39.2
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 1.0e-33 147.9 152 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 1.8e-33 147.1 138 51.4
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 5.2e-33 145.6 144 47.9
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 9.8e-32 141.4 252 38.9
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 6.3e-31 138.7 127 55.1
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 1.7e-28 130.6 122 54.9
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 2.3e-28 130.2 136 48.5
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 2.8e-26 123.2 242 37.6
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 3.6e-26 122.9 86 69.8
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 4.9e-23 112.5 104 54.8
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 4.6e-21 105.9 106 49.1
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 1.2e-16 91.3 119 43.7
TPR.G22067 Trifolium pratense HOM05D007016 ORTHO05D008847 3.2e-06 56.6 80 46.2


User provided reference genes

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